View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_350 (Length: 249)
Name: NF11737A_low_350
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_350 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 47383276 - 47383508
Alignment:
| Q |
1 |
ggtgccagacctctaagaagagctataatgcgacttttggaagacagcatggctgagaagatgcttgctagagagattaaagagggtgactctgttatag |
100 |
Q |
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| T |
47383276 |
ggtgccagacctctaagaagagctataatgcgacttttggaagacaacatggctgagaagatgcttgctagagagattaaagagggtgactctgttatag |
47383375 |
T |
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| Q |
101 |
tggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgccagagtctcttccagtgtaatattgtgtacttgt |
200 |
Q |
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| T |
47383376 |
tggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgccagagtctcttcctgtgtaatattgtgtacttgt |
47383475 |
T |
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| Q |
201 |
tttaagagccatagtctgtttagctgttgatgt |
233 |
Q |
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| T |
47383476 |
tttaagagccatagtctgtttagctgttgatgt |
47383508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 47818349 - 47818524
Alignment:
| Q |
1 |
ggtgccagacctctaagaagagctataatgcgacttttggaagacagcatggctgagaagatgcttgctagagagattaaagagggtgactctgttatag |
100 |
Q |
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| T |
47818349 |
ggtgccagacctctaagaagagctataatgcaacttttggaagacatcatggctgagaagatgcttgctagagagattaaagagggcgactc--ttatag |
47818446 |
T |
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| Q |
101 |
tggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgccagagtctcttc |
178 |
Q |
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| T |
47818447 |
tggatgctgattctgatggaaatgtgattgtgctcaatggtagtagtggtgctgcaaattcattgccagaggctcttc |
47818524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 45116228 - 45116366
Alignment:
| Q |
4 |
gccagacctctaagaagagctataatgcgacttttggaagacagcatggctgagaagatgcttgctagagagattaaagagggtgactctgttatagtgg |
103 |
Q |
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||||| |||||||||||||| || |||||||||||||| || |||||||||||||||||||| || |||||||| |||||||||||||| || ||||||| |
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| T |
45116228 |
gccaggcctctaagaagagccatcatgcgacttttggaggatagcatggctgagaagatgctcgccagagagatcaaagagggtgactccgtaatagtgg |
45116327 |
T |
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| Q |
104 |
atgctgattccgatggaaatgtgattgtgctcaatggta |
142 |
Q |
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| T |
45116328 |
atgttgattccgagggtaatgtgattgttctcaatggta |
45116366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 40245993 - 40246178
Alignment:
| Q |
4 |
gccagacctctaagaagagctataatgcgacttttggaagacagcatggctgagaagatgcttgctagagagattaaagagggtgactctgttatagtgg |
103 |
Q |
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| T |
40245993 |
gccaggcctctaagacgagccataatgcgacttttggaggacagcatggctgaaaagatgcttgctagggagattaaagagggcgactctgttatagtgg |
40246092 |
T |
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| Q |
104 |
atgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgccagagtctcttccagtgtaatat |
189 |
Q |
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| T |
40246093 |
atgctgattctgatggaaacgtgattgtactcaacggtagtactggtgctccagattcattgccagatgctcttcctgtgtaatat |
40246178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 40246195 - 40246238
Alignment:
| Q |
189 |
ttgtgtacttgttttaagagccatagtctgtttagctgttgatg |
232 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
40246195 |
ttgtgtacttgttttaagagccatagtctgttttgttgttgatg |
40246238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 34054687 - 34054593
Alignment:
| Q |
73 |
gagattaaagagggtgactctgttatagtggatgctgattccgatggaaatgtgattgtgctcaatggtagtagtggtgctccaaattcattgcc |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
34054687 |
gagattaaagagggtgactctgttatagtggatgctgattctgatggaaatgttattgtgctcaatggtagtagtggtgctccagattcattgcc |
34054593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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