View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_351 (Length: 249)

Name: NF11737A_low_351
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_351
NF11737A_low_351
[»] chr8 (5 HSPs)
chr8 (5-231)||(35062523-35062749)
chr8 (5-229)||(10552334-10552557)
chr8 (5-228)||(41791055-41791279)
chr8 (5-228)||(30235918-30236143)
chr8 (5-224)||(32945500-32945718)
[»] chr2 (9 HSPs)
chr2 (5-228)||(18681131-18681358)
chr2 (5-219)||(12793530-12793745)
chr2 (109-226)||(9926384-9926500)
chr2 (5-224)||(31902216-31902429)
chr2 (5-145)||(915328-915468)
chr2 (116-191)||(29044684-29044760)
chr2 (5-66)||(22885087-22885148)
chr2 (5-65)||(2062955-2063015)
chr2 (20-64)||(29044792-29044836)
[»] chr1 (7 HSPs)
chr1 (5-226)||(4651845-4652067)
chr1 (18-186)||(35250110-35250278)
chr1 (20-225)||(2987912-2988119)
chr1 (88-226)||(11839372-11839509)
chr1 (88-224)||(17993913-17994051)
chr1 (5-79)||(27102257-27102331)
chr1 (7-96)||(28395013-28395103)
[»] chr5 (5 HSPs)
chr5 (7-227)||(31721745-31721966)
chr5 (14-223)||(39024238-39024449)
chr5 (155-222)||(36979123-36979191)
chr5 (132-194)||(31742359-31742421)
chr5 (158-219)||(24436031-24436095)
[»] chr7 (3 HSPs)
chr7 (5-225)||(38485621-38485845)
chr7 (77-216)||(9349847-9349986)
chr7 (20-217)||(46133085-46133276)
[»] chr3 (4 HSPs)
chr3 (5-228)||(30935178-30935405)
chr3 (5-228)||(1652677-1652901)
chr3 (110-211)||(34574847-34574948)
chr3 (14-66)||(33143902-33143954)
[»] chr6 (5 HSPs)
chr6 (7-192)||(26215846-26216032)
chr6 (46-219)||(12794211-12794385)
chr6 (5-82)||(26534653-26534731)
chr6 (111-200)||(21266278-21266367)
chr6 (7-82)||(9224109-9224185)
[»] chr4 (3 HSPs)
chr4 (20-165)||(43373949-43374094)
chr4 (5-120)||(35800555-35800670)
chr4 (5-66)||(12296241-12296302)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 35062523 - 35062749
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  35062523 agtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgatctttagagaaggagttcttcggaggtggc 35062622  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggt 204  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35062623 acaatgttggtgatgaggactgggttctcttttacaagggtgttctcttgaggtgagtagtggcgacgagtgttatggatgttgttttttagtggttggt 35062722  T
Q  205 tagtataggagtcagttttaggggagg 231  Q
    ||||||| |||||||||||||||||||    
T  35062723 tagtatatgagtcagttttaggggagg 35062749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 10552334 - 10552557
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||| |||||||||||||| |||||| ||| | |||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||    
T  10552334 agtttggttttgtgctttttaggtgttacttcgggggacc-gaggttgcgttgtggtggaagctgaatgatctttagagaagaagttcttcggaggtggc 10552432  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggt 204  Q
    ||| |||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||||||||||| |    
T  10552433 acagtgttggagatgaggactgggttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagttttatggatgtcgttttttagtggttgct 10552532  T
Q  205 tagtataggagtcagttttagggga 229  Q
    ||||||| |||||||||||||||||    
T  10552533 tagtatatgagtcagttttagggga 10552557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 41791279 - 41791055
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    ||||| || |||| |||||| ||||||  |||| ||||  ||||||||||||||||||||||  || |||  ||| || ||| |||||||| || ||| |    
T  41791279 agtttagttttggacttttttggtgttatttcgatggactagaggttgcgcggtggtggaagcggattgatatttggaaaaggagttcttcagatgtgac 41791180  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttgg 203  Q
     || | ||||||||||||| ||| |  ||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||| ||||||| ||||||  |    
T  41791179 tcacttttggtgatgaggactggttcctcttttacaagggtgttcttttgaggtgagtagtggtgatgagggttatgaatgtcgttttttcagtggtcag 41791080  T
Q  204 ttagtataggagtcagttttagggg 228  Q
    | |||||| ||||||||||||||||    
T  41791079 taagtatatgagtcagttttagggg 41791055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 30236143 - 30235918
Alignment:
Q  5 agtttggtgttgggcttttta-ggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtgg 103  Q
    |||||||| |||||||||||  ||||||   |||||||| ||||| |||||| |||||||||| ||| ||| ||||||| ||||||||||| ||| |||     
T  30236143 agtttggttttgggctttttttggtgttgtatcggtggaccagagattgcgcagtggtggaagctgattgatctttagaaaagaagttctttggatgtga 30236044  T
Q  104 cacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttt-tttagtggttg 202  Q
    | |  |||||||  |||||| ||| || ||| || | |||||||||  ||| |||||||||||| || ||||||||||||||| |||| |||| |||| |    
T  30236043 ctcggtgttggtattgaggactggtttctctcttgctagggtgttcgtttgtggtgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcg 30235944  T
Q  203 gttagtataggagtcagttttagggg 228  Q
    |||| |||||||||||||||||||||    
T  30235943 gttaatataggagtcagttttagggg 30235918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 32945718 - 32945500
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||| | ||||| |||||||||   ||||| || || || |||||| ||||||| ||||||| |||||||||||| || ||| |    
T  32945718 agtttggttttgggcttttttgatgttctttcggtggactggaggtcgcacg-tgatggaagctgaatgatctttagaaaagaagttcttcagatgtgac 32945620  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggt 204  Q
     |  |||||||||||| || ||| || | ||||||||  ||||||| |||||||||||||||| || ||||||||||||||| ||| |||    || |||    
T  32945619 tcggtgttggtgatgatgactggtttcttttttacaaaagtgttcttttgaggtgagtagtggcgatgagtgttatggatgtcgttctttcagcgtcggt 32945520  T
Q  205 tagtataggagtcagtttta 224  Q
      ||||||||||||||||||    
T  32945519 aggtataggagtcagtttta 32945500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 18681131 - 18681358
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||  |||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||||| || |||||||| |||||    
T  18681131 agtttggttttgggcttttgtggtgttcctttggtggatcagaggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtggc 18681230  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt----tgttttttagtggt 200  Q
     |||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||    | ||||||||||||    
T  18681231 tcaatgttggtgatgaggactaggttctcttttacaagggtgttcttttgaggtgagtggtggcgacgagtgttttggatgtcgtgttttttttagtggt 18681330  T
Q  201 tggttagtataggagtcagttttagggg 228  Q
    |||| |||||||||||||||||||||||    
T  18681331 tggtaagtataggagtcagttttagggg 18681358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 12793745 - 12793530
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||  |||||||||||| |||| | ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  12793745 agtttggttttgggcttttatggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggc 12793647  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttg--ttttttagtggttg 202  Q
     |  ||||||||||||| | |  ||| |||||||||| |||||||| ||||||||||||||||||||||||| |||  |||| |  ||||||||||| ||    
T  12793646 tcggtgttggtgatgagaagtaagttctcttttacaaaggtgttcttttgaggtgagtagtggtgacgagtgatatttatgtcgctttttttagtggctg 12793547  T
Q  203 gttagtataggagtcag 219  Q
    ||||| |||||||||||    
T  12793546 gttagcataggagtcag 12793530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 9926384 - 9926500
Alignment:
Q  109 tgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagt 208  Q
    ||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||| | ||||| |||||| ||| |||    
T  9926384 tgttggtgatgaggactgggttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatg-tctttttcagtggtcggtaagt 9926482  T
Q  209 ataggagtcagttttagg 226  Q
    ||||||||||||||||||    
T  9926483 ataggagtcagttttagg 9926500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 31902429 - 31902216
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||| |||| || | |||||||| |||||| | ||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||||| ||| |    
T  31902429 agtttggttttgagcttatttgatgttcctttggtggaccggaggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgac 31902330  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttgg 203  Q
     || |||||||| |||||| | |||| |||||||||| |||||||      ||| |||||||| ||||||||||   ||||| ||||||| | |||||||    
T  31902329 tcagtgttggtgttgaggacttggttctcttttacaa-ggtgttc------ggttagtagtggcgacgagtgtttcagatgtcgttttttcactggttgg 31902237  T
Q  204 ttagtataggagtcagtttta 224  Q
    |||||||||||||||||||||    
T  31902236 ttagtataggagtcagtttta 31902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 915468 - 915328
Alignment:
Q  5 agtttggtgttgg-gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtgg 103  Q
    |||||||| |||| ||||||||| | ||| ||||||| | | ||||||||||||||||||||| | |||||  || ||| ||| ||||||||||| || |    
T  915468 agtttggttttggagctttttag-tattctttcggtgcaccggaggttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttg 915370  T
Q  104 cacaatgttggtgatgaggattgggttatcttttacaagggt 145  Q
    | || |||||||||||||||||||||| ||| ||||||||||    
T  915369 ctcagtgttggtgatgaggattgggttctctattacaagggt 915328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 29044760 - 29044684
Alignment:
Q  116 gatgaggattgggttatcttttacaagggtgttctctt-gaggtgagtagtggtgacgagtgttatggatgttgttt 191  Q
    |||||||| |||||| ||| ||||||||||||||| || |||||||||||||  || | ||||||||||||| ||||    
T  29044760 gatgaggactgggttttctgttacaagggtgttcttttggaggtgagtagtgacgatgggtgttatggatgtcgttt 29044684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 22885148 - 22885087
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 66  Q
    |||||||| ||||| | ||| ||||||| ||||||||| ||||||||| | |||||||||||    
T  22885148 agtttggttttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaag 22885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 2062955 - 2063015
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaa 65  Q
    |||||||| ||||||||||| ||||||| ||||||| | ||||||||| | ||| ||||||    
T  2062955 agtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggttgtggaa 2063015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 29044836 - 29044792
Alignment:
Q  20 tttttaggtgttccttcggtggatcagaggttgcgcggtggtgga 64  Q
    ||||||||||||| ||||||||| ||||||||| || ||||||||    
T  29044836 tttttaggtgttctttcggtggaccagaggttgtgcagtggtgga 29044792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 4651845 - 4652067
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  4651845 agtttggttttgggcttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggc 4651944  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttgg 203  Q
     || ||||||||||| ||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||| ||||||| |||||||||    
T  4651945 tcattgttggtgatggggacttggttctcttttacaagggtgttcttttgaggtgagttgtggtgacgagtgttttagatgtcgttttttcagtggttgg 4652044  T
Q  204 ttagtataggagtcagttttagg 226  Q
    | | |||||||||||||| ||||    
T  4652045 taactataggagtcagttgtagg 4652067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 35250278 - 35250110
Alignment:
Q  18 gctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtga 117  Q
    |||||||||||||||||||||  || |||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||  ||    
T  35250278 gctttttaggtgttccttcggctgaccagaggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggcacattgttgaaga 35250179  T
Q  118 tgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt 186  Q
    |||||| ||| || |||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  35250178 tgaggactggattctcttttacaaggatgttcttttgaggtgagtagtggcgacgagttttatggatgt 35250110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 2988119 - 2987912
Alignment:
Q  20 tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatg 119  Q
    ||||| |||||||||||| | || | ||||||| ||||||||||||| ||||||| |||||| |||| ||||||||||| ||||| |  |||||||||||    
T  2988119 ttttttggtgttccttcgatagaccggaggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcggatgtggctcggtgttggtgatg 2988020  T
Q  120 aggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgt--tgttttttagtggttggttagtataggagtc 217  Q
    ||||   |||| ||||||||||||||||||| | |||||| | ||| | ||||||||||||| ||||  | ||||| |||||||||| |||||| |||||    
T  2988019 aggacatggttctcttttacaagggtgttctttagaggtgcgaagttgcgacgagtgttatgaatgtcatttttttcagtggttggtaagtatatgagtc 2987920  T
Q  218 agttttag 225  Q
    ||||||||    
T  2987919 agttttag 2987912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 11839372 - 11839509
Alignment:
Q  88 agttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgtt 187  Q
    ||||||| ||| ||||| | ||||||| ||||||||||| ||| |||||||||||  |||||| ||| ||||||| ||||  | ||||||||||||||||    
T  11839372 agttctttggatgtggctcgatgttggggatgaggattgagttctcttttacaaga-tgttcttttggggtgagtggtggcaaagagtgttatggatgtt 11839470  T
Q  188 gttttttagtggttggttagtataggagtcagttttagg 226  Q
    ||||||||||||| ||| ||| ||||| |||||||||||    
T  11839471 gttttttagtggtcggtaagtttaggaatcagttttagg 11839509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 17994051 - 17993913
Alignment:
Q  88 agttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgtt 187  Q
    ||||||||||| ||||| | |||||||||||||||||||||||  || ||||||||||||||| ||| |||||| ||||  || || |||||||  |||     
T  17994051 agttcttcggatgtggctcgatgttggtgatgaggattgggttccctattacaagggtgttcttttggggtgagcagtgacgatgactgttatgagtgtc 17993952  T
Q  188 gtttttt--agtggttggttagtataggagtcagtttta 224  Q
    |||||||  |||||| ||| ||| ||||| ||| |||||    
T  17993951 gtttttttcagtggtaggtaagtttaggaatcactttta 17993913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 27102257 - 27102331
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgaccttt 79  Q
    |||||||| |||||||||||| |  ||| ||||||||||| ||||| | | ||||||||||| ||||||| ||||    
T  27102257 agtttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 28395103 - 28395013
Alignment:
Q  7 tttggtgttgggctttt-taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcg 96  Q
    |||||| |||||||||| | |||| || || |||||| | ||||||| | | ||||||||||||||||| ||||||| ||| |||||||||    
T  28395103 tttggttttgggcttttattggtgctcttttggtggaccggaggttgtgggttggtggaaggtgaatgatctttagaaaaggagttcttcg 28395013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 31721745 - 31721966
Alignment:
Q  7 tttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcac 106  Q
    |||||| ||||| | ||| ||||||||||| ||||| | || |||||||||||||||||| ||| ||| ||||||||||  ||||||| ||| ||||| |    
T  31721745 tttggttttgggttgttttggtgttccttcagtggaccggatgttgcgcggtggtggaagttgattgatctttagagaatgagttctttggatgtggctc 31721844  T
Q  107 aatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggtt 205  Q
     |||||||||| ||||| || ||| ||||||||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||| ||||||||||     
T  31721845 gatgttggtgacgaggactgagttctcttttacaagggtgtttttttgaggtgagtagtggcgacgagtgttatggatgtcgttttttcagtggttggta 31721944  T
Q  206 agtataggagtcagttttaggg 227  Q
    ||||||||||||||||||||||    
T  31721945 agtataggagtcagttttaggg 31721966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 39024449 - 39024238
Alignment:
Q  14 ttgggcttttta-ggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgtt 112  Q
    ||||| |||||| ||||||| ||||||||||  || |||| | ||||||||||  ||||||| || |||| ||| ||| |||| || ||||   |   ||    
T  39024449 ttgggttttttatggtgttctttcggtggattggaagttgagaggtggtggaacttgaatgatctgtagaaaaggagtccttccgatgtggtttagattt 39024350  T
Q  113 ggtgatgaggattgggttat-cttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagtata 211  Q
    ||||||||||| |||||  | |||||||||||||||||| ||  |||||||||||  || ||||||||||||| | |||||| | |||| ||||||||||    
T  39024349 ggtgatgaggactgggtgcttcttttacaagggtgttcttttagggtgagtagtgacgatgagtgttatggatatcgtttttcaatggtcggttagtata 39024250  T
Q  212 ggagtcagtttt 223  Q
     |||||| ||||    
T  39024249 agagtcaatttt 39024238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 36979123 - 36979191
Alignment:
Q  155 aggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtcagttt 222  Q
    ||||||||||||| ||| |||||| ||||||||||||||| |||||||||| |||||| ||||||||||    
T  36979123 aggtgagtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagttt 36979191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 31742359 - 31742421
Alignment:
Q  132 tcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt 194  Q
    ||||||||||||||||||| ||| |||||||||||| || | ||||||||||| | |||||||    
T  31742359 tcttttacaagggtgttcttttggggtgagtagtggcgatgggtgttatggatatcgtttttt 31742421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 24436031 - 24436095
Alignment:
Q  158 tgagtagtggtgacgagtgttatggatgttgtttttt---agtggttggttagtataggagtcag 219  Q
    |||||||||| |||||||||||| ||||| |||||||   |||||||||| ||| ||||||||||    
T  24436031 tgagtagtggcgacgagtgttatagatgtcgttttttttcagtggttggtaagtttaggagtcag 24436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 38485621 - 38485845
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||| |||||||||||| |||| | |||||||| |||||||||||| ||||||| ||||||||||| |||||||| || |||||    
T  38485621 agtttggttttgggcttttttggtgttccttcgatggaccggaggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggc 38485720  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatg----ttgttttttagtggt 200  Q
     || |||||||||| |||| | |||| |||||||||| |||||||| ||||||||||| |||| |||||||||| ||||||    || ||||| ||||||    
T  38485721 tcattgttggtgataaggacttggttctcttttacaaaggtgttcttttgaggtgagttgtggcgacgagtgttttggatgtcatttttttttcagtggt 38485820  T
Q  201 tggttagtataggagtcagttttag 225  Q
    |||| | ||||||||||||||||||    
T  38485821 tggtaactataggagtcagttttag 38485845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 9349847 - 9349986
Alignment:
Q  77 tttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtg 176  Q
    |||||||||||||||||||||| ||||| |  ||||||||||||| |||| ||| ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  9349847 tttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcgacgagtg 9349946  T
Q  177 ttatggatgttgttttttagtggttggttagtataggagt 216  Q
    |||||||||| ||||| ||||||||||| |||||||||||    
T  9349947 ttatggatgtcgttttctagtggttggtaagtataggagt 9349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 46133276 - 46133085
Alignment:
Q  20 tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatg 119  Q
    ||||| ||||||||||||||||| | ||||||||| ||||| ||||| ||| ||| ||||||| ||  ||||||| ||| ||| | |  |||||||||||    
T  46133276 ttttttggtgttccttcggtggaccggaggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggtgatg 46133177  T
Q  120 aggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtc 217  Q
    | || |||||| |||||||||| ||||||       ||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||||||| |||||    
T  46133176 atgactgggttctcttttacaa-ggtgtt------tggtgagtagtggcaacgagtgttttggatgtcgttttttcagtggttggttagtataagagtc 46133085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 30935405 - 30935178
Alignment:
Q  5 agtttggtgttgggctttttaggtgttcctt-cggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtgg 103  Q
    |||||||| ||| ||||||| |||||| ||| | | ||| | ||| || |||||||||||||| ||||||| ||||||| ||| ||||||||||| ||||    
T  30935405 agtttggttttgagcttttttggtgtttctttcagcggaccggagattacgcggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtgg 30935306  T
Q  104 cacaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt---agtggt 200  Q
    | |  ||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||||||    ||||     
T  30935305 ctcggtgttggtgatgaggactgagttctcttttacaagggtgttcttttgaggtgagtagtggcgacgagtgttatagatgtcgtttttttccggtggc 30935206  T
Q  201 tggttagtataggagtcagttttagggg 228  Q
    |||| |||||| ||||||||||||||||    
T  30935205 tggtaagtataagagtcagttttagggg 30935178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 1652901 - 1652677
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||| ||||||| ||||||||| | ||||||  ||||||| ||||| ||||||| ||||||| ||| ||||| ||| |  ||||    
T  1652901 agtttggttttgggcttttttggtgttctttcggtggaccggaggttaagcggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggc 1652802  T
Q  105 acaatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttg-ttttttagtggttgg 203  Q
     |  |||||||||| |||| ||| |  |||||| |||||||||||| |||||||||||||||  || |||||||||| |||| | ||||||||||||||     
T  1652801 tcggtgttggtgataaggaatggttcctctttttcaagggtgttcttttgaggtgagtagtgacgatgagtgttatgaatgtcgtttttttagtggttgt 1652702  T
Q  204 ttagtataggagtcagttttagggg 228  Q
    | |  |||| |||||||||||||||    
T  1652701 taaacatagaagtcagttttagggg 1652677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 34574847 - 34574948
Alignment:
Q  110 gttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggttggttagta 209  Q
    |||||||||||||| | | || ||||||| ||||||||||| |||||||||||| || ||||||||||||||||||| |||||||| |||||||||| ||    
T  34574847 gttggtgatgaggacttgattctcttttataagggtgttcttttgaggtgagtattgatgacgagtgttatggatgtcgttttttaatggttggttacta 34574946  T
Q  210 ta 211  Q
    ||    
T  34574947 ta 34574948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 33143954 - 33143902
Alignment:
Q  14 ttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 66  Q
    |||||||||||| |  ||| ||||||||||||||||| ||| |||||||||||    
T  33143954 ttgggctttttatggtttctttcggtggatcagaggtcgcgaggtggtggaag 33143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 26216032 - 26215846
Alignment:
Q  7 tttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagtt-cttcggaggtggca 105  Q
    |||||| ||||||||||| ||||||| || |||||| | ||| ||||||||||||||||| ||| ||| |||| || ||| |||| ||||  | |||||     
T  26216032 tttggttttgggcttttttggtgttcttttggtggaccggagattgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggct 26215933  T
Q  106 caatgttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttt 192  Q
    || ||||||||||||||| | | || |||||||||  |||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  26215932 cagtgttggtgatgaggactagtttctcttttacattggtgttcttttgaggtgagtcgtggtgacgagtgttatgaatgttgtttt 26215846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 12794211 - 12794385
Alignment:
Q  46 gaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatgaggattgggttatcttttacaagggt 145  Q
    |||||||||||||||||||||  || ||| ||||||| ||| | |||||| || ||| | |  |||||| | |||||| ||| || ||||||| ||||||    
T  12794211 gaggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggttgaggactggtttctcttttataagggt 12794310  T
Q  146 gttctcttgaggtgagtagtggtgacgagtgttatggatgttgtttttt-agtggttggttagtataggagtcag 219  Q
    ||||| ||||||||||||||||  | |||||||||| |||| ||||||| |||||| | | ||||||||||||||    
T  12794311 gttcttttgaggtgagtagtggcaatgagtgttatgaatgtcgttttttcagtggtcgataagtataggagtcag 12794385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 26534731 - 26534653
Alignment:
Q  5 agtttggtgttgggcttttt-aggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 82  Q
    |||||||| ||||||||||| |||||||| ||||||||| |  |||||| ||||||||||||| ||| ||| |||||||    
T  26534731 agtttggttttgggcttttttaggtgttctttcggtggaccgaaggttgtgcggtggtggaagctgattgatctttaga 26534653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 21266278 - 21266367
Alignment:
Q  111 ttggtgatgaggattgggttatcttttacaagggtgttctcttgaggtgagtagtggtgacgagtgttatggatgttgttttttagtggt 200  Q
    |||||| ||||||||| ||| |||||||||| |||||||  ||| |||||||||||  || |  |||| ||||||| |||||| ||||||    
T  21266278 ttggtgttgaggattgagttttcttttacaacggtgttcctttggggtgagtagtgacgatggttgttctggatgtcgtttttcagtggt 21266367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9224109 - 9224185
Alignment:
Q  7 tttggtgttgggctttt-taggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttaga 82  Q
    |||||| |||||||||| | |||| || ||||||| | | ||||||| ||||||||||||| ||||||| |||||||    
T  9224109 tttggttttgggcttttattggtgctctttcggtgcaccggaggttgtgcggtggtggaagctgaatgatctttaga 9224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 43374094 - 43373949
Alignment:
Q  20 tttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggcacaatgttggtgatg 119  Q
    ||||| ||||||| ||| ||||||| ||||||||||||||||||||| ||| ||| ||||||| ||  |||||||| |||||| | |  |||||||||||    
T  43374094 ttttttggtgttctttcagtggatcggaggttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatg 43373995  T
Q  120 aggattgggttatcttttacaagggtgttctcttgaggtgagtagt 165  Q
    | || | | || ||||||||||||||||||| ||||||||||||||    
T  43373994 atgacttgtttctcttttacaagggtgttcttttgaggtgagtagt 43373949  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 35800555 - 35800670
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgacctttagagaagaagttcttcggaggtggc 104  Q
    |||||||| ||||||||||| ||||||| ||||||||| | |||||| |||||||||||||  ||||||| |||| |  ||| ||||||| ||| |||||    
T  35800555 agtttggttttgggcttttttggtgttctttcggtggaccggaggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggc 35800654  T
Q  105 acaatgttggtgatga 120  Q
     |  ||||||||||||    
T  35800655 tcgttgttggtgatga 35800670  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 12296241 - 12296302
Alignment:
Q  5 agtttggtgttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaag 66  Q
    |||||| | ||||||||||| ||||||| ||||||||| | ||||||| | |||||||||||    
T  12296241 agtttgattttgggcttttttggtgttctttcggtggaccggaggttgtgtggtggtggaag 12296302  T

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