View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_354 (Length: 249)
Name: NF11737A_low_354
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_354 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 17643101 - 17642905
Alignment:
| Q |
38 |
tttacaaaaatggagaggagttatcatggtcaataaaaatgagacatttaggtgtgtaaagagggagaaaatagaaaagtaataacaaggtttcttgcct |
137 |
Q |
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| T |
17643101 |
tttacaaaaatggagaggagttatcatggtcaataaaaatgagacatttaggtgtgtaaagagggagcaaatagaaaagtgataataaggtttcttgcct |
17643002 |
T |
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| Q |
138 |
agtaaacataaaagattcgacatgtgactaaat-aagataaatcagaatcaaataactttcctttgtgagcaaacaaaagacatgagagaatcaagaagt |
236 |
Q |
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| T |
17643001 |
agtaaacataaaagattc----tttgactaaataaagataaatcagaatcaaataactttcctttgtgagcaaacaaaagacatgagagaatcaagaagt |
17642906 |
T |
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