View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_356 (Length: 248)
Name: NF11737A_low_356
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_356 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 10290210 - 10290336
Alignment:
| Q |
108 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
207 |
Q |
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| T |
10290210 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
10290309 |
T |
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| Q |
208 |
taagaactgttggaccattttgatgtc |
234 |
Q |
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| T |
10290310 |
taagaactgttggagcattttgatgtc |
10290336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10290055 - 10290155
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagt |
100 |
Q |
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| T |
10290055 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagt |
10290154 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
10290155 |
a |
10290155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 10298669 - 10298736
Alignment:
| Q |
167 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc |
234 |
Q |
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| T |
10298669 |
ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc |
10298736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 9747171 - 9747055
Alignment:
| Q |
108 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca |
207 |
Q |
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| T |
9747171 |
aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca |
9747072 |
T |
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| Q |
208 |
taagaactgttggacca |
224 |
Q |
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| T |
9747071 |
caaggactgttggacca |
9747055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 9747455 - 9747370
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
89 |
Q |
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| T |
9747455 |
tagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa---ctctgaatgaaatataaaggtcgtcatgggcaacag |
9747370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
| Q |
108 |
aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag |
166 |
Q |
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| T |
10298467 |
aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag |
10298525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10298176 - 10298270
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaata |
98 |
Q |
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| T |
10298176 |
tagttctccaaaagagcatatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaaggtcatcatagtcaacaggtaaaaata |
10298270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37743972 - 37743885
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
89 |
Q |
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| T |
37743972 |
tagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
37743885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34694432 - 34694519
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
89 |
Q |
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| T |
34694432 |
tagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
34694519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34716844 - 34716931
Alignment:
| Q |
1 |
tagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacag |
89 |
Q |
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| T |
34716844 |
tagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggtcatcatggtcaacag |
34716931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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