View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_360 (Length: 248)
Name: NF11737A_low_360
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_360 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12416273 - 12416025
Alignment:
| Q |
1 |
ggtagaatggtgatcttgtttccgttttttcagtttgcttctgctttgttcaattttagttgccatatgtactaatcctgtcttaatttcttgcaagcaa |
100 |
Q |
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| T |
12416273 |
ggtagaatggtgatcttgtttccggtttt-cagtttgcttctgctttgttcaattttagttgccatatgtactaatcctgtcttaatttcttgcaagcaa |
12416175 |
T |
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| Q |
101 |
atccttcagannnnnnnn--gcctaatgtgtcttaataacgcactagatcatgtcatgatatatat----ggagtatttgtttgtgactcaccagcatgt |
194 |
Q |
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| T |
12416174 |
atctttcagatttttgttttgcctaatgtgtcttaataacgcactagatcatgtcatgatatatatctatggagtatttgtttgtgactcaccagcatgt |
12416075 |
T |
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| Q |
195 |
caaaatctgttttttgtttgtaaaacatctttgttgatgtccatctcattg |
245 |
Q |
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| T |
12416074 |
caaaatctgttttttgtttgtaaaacatctttgttgatat-catctcattg |
12416025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12428333 - 12428085
Alignment:
| Q |
1 |
ggtagaatggtgatcttgtttccgttttttcagtttgcttctgctttgttcaattttagttgccatatgtactaatcctgtcttaatttcttgcaagcaa |
100 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12428333 |
ggtagaatggtgatcttgtttccggtttt-cagtttgcttctgctttgttcaattttagttgccatatgtactaatcctgtcttaatttcttgcaagcaa |
12428235 |
T |
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| Q |
101 |
atccttcagannnnnnnn--gcctaatgtgtcttaataacgcactagatcatgtcatgatatatat----ggagtatttgtttgtgactcaccagcatgt |
194 |
Q |
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| T |
12428234 |
atctttcagatttttgttttgcctaatgtgtcttaataacgcactagatcatgtcatgatatatatctatggagtatttgtttgtgactcaccagcatgt |
12428135 |
T |
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| Q |
195 |
caaaatctgttttttgtttgtaaaacatctttgttgatgtccatctcattg |
245 |
Q |
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| T |
12428134 |
caaaatctgttttttgtttgtaaaacatctttgttgatat-catctcattg |
12428085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 12402298 - 12402229
Alignment:
| Q |
161 |
atatggagtatttgtttgtgactcaccag-----catgtcaaaatctgttttttgtttgtaaaacatctt |
225 |
Q |
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| T |
12402298 |
atatggagtatttgtttgtgactcaccagaccagcatgtcaaaatctgtttgttgtttgtaaaacatctt |
12402229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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