View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_361 (Length: 248)

Name: NF11737A_low_361
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_361
NF11737A_low_361
[»] chr1 (4 HSPs)
chr1 (92-247)||(4877259-4877429)
chr1 (92-247)||(4872957-4873129)
chr1 (137-247)||(30189939-30190049)
chr1 (92-143)||(30189876-30189928)
[»] chr8 (4 HSPs)
chr8 (92-247)||(3058315-3058487)
chr8 (92-247)||(3062616-3062788)
chr8 (92-245)||(26082911-26083081)
chr8 (95-143)||(26065168-26065216)
[»] chr6 (1 HSPs)
chr6 (92-247)||(6667972-6668144)
[»] chr4 (2 HSPs)
chr4 (92-247)||(17439412-17439584)
chr4 (92-247)||(17443714-17443886)
[»] chr3 (2 HSPs)
chr3 (139-202)||(28010300-28010363)
chr3 (92-120)||(28013761-28013789)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 4877259 - 4877429
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt---------------ttaatgtagtagttgaagctacctctgcagaagtat 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||| |||||||||||||||||    
T  4877259 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttgttttcttttattttaatgtagtagttgaagttacctctgcagaagtat 4877358  T
Q  177 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877359 ggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 4877429  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 4872957 - 4873129
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagctacctctgcagaagt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||| |||||||||||||||    
T  4872957 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 4873056  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873057 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 4873129  T

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Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 30189939 - 30190049
Alignment:
Q  137 tattttaatgtagtagttgaagctacctctgcagaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 236  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30189939 tattttaatgtagtagttgaagttacctctgcaaaagtatggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactac 30190038  T
Q  237 tatgctgtcct 247  Q
    |||||||||||    
T  30190039 tatgctgtcct 30190049  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 30189876 - 30189928
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagta-ttttgtgatatttta 143  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30189876 tgttgagacattgagctttcagatgtacacaatagtatttttgtgatatttta 30189928  T

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Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 3058315 - 3058487
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagctacctctgcagaagt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||| |||||||||||||||    
T  3058315 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 3058414  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058415 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 3058487  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Original strand, 3062616 - 3062788
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatt-----------------ttaatgtagtagttgaagctacctctgcagaagt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||| |||||||||||||||    
T  3062616 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 3062715  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062716 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 3062788  T

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Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 26083081 - 26082911
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagctacctctgcagaagt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||||||||||||    
T  26083081 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 26082982  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082981 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtc 26082911  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 26065216 - 26065168
Alignment:
Q  95 tgagacattgagatttcagatgtacacaatagtattttgtgatatttta 143  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||    
T  26065216 tgagacattgagatttcagattaatacaatagtattttgtgatatttta 26065168  T

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Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 6668144 - 6667972
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagctacctctgcagaagt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||||||||||||    
T  6668144 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttattttttcttttattttaatgtagtagttgaagttacctctgcagaagt 6668045  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668044 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 6667972  T

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Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 17439584 - 17439412
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagctacctctgcagaagt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||||||||||||    
T  17439584 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17439485  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439484 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 17439412  T

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Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 17443886 - 17443714
Alignment:
Q  92 tgttgagacattgagatttcagatgtacacaatagtattttgtgatatttta-----------------atgtagtagttgaagctacctctgcagaagt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||||||||||||    
T  17443886 tgttgagacattgagatttcagatgtacacaatagtattttgtgatattttatgttttcttttattttaatgtagtagttgaagttacctctgcagaagt 17443787  T
Q  175 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443786 atggtgacccatacttgttagagtgtttaagactttgtaatcttggttaggtgacagactactatgctgtcct 17443714  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 28010363 - 28010300
Alignment:
Q  139 ttttaatgtagtagttgaagctacctctgcagaagtatggtgacccatacttgttagagtgttt 202  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||  |||||||    
T  28010363 ttttaatatagttgttgaagttacctctgcataagtatggtgacccatacttgttgaagtgttt 28010300  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 28013789 - 28013761
Alignment:
Q  92 tgttgagacattgagatttcagatgtaca 120  Q
    |||||||||||||||||||||||||||||    
T  28013789 tgttgagacattgagatttcagatgtaca 28013761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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