View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_362 (Length: 248)

Name: NF11737A_low_362
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_362
NF11737A_low_362
[»] chr5 (2 HSPs)
chr5 (1-217)||(28175048-28175256)
chr5 (9-127)||(35946854-35946972)
[»] chr6 (4 HSPs)
chr6 (15-127)||(26292391-26292503)
chr6 (9-127)||(7022666-7022784)
chr6 (9-127)||(34252154-34252272)
chr6 (18-92)||(10570531-10570605)
[»] chr4 (1 HSPs)
chr4 (9-127)||(19816443-19816561)
[»] chr3 (2 HSPs)
chr3 (9-127)||(29018711-29018829)
chr3 (9-107)||(55429053-55429152)
[»] chr2 (1 HSPs)
chr2 (4-107)||(29763154-29763257)
[»] chr8 (2 HSPs)
chr8 (9-127)||(15917354-15917472)
chr8 (9-101)||(8567706-8567798)
[»] chr1 (4 HSPs)
chr1 (9-127)||(5171106-5171224)
chr1 (9-127)||(6770864-6770982)
chr1 (18-127)||(33931596-33931705)
chr1 (126-177)||(6770791-6770842)
[»] chr7 (2 HSPs)
chr7 (9-108)||(5952989-5953088)
chr7 (9-51)||(13583464-13583506)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 28175256 - 28175048
Alignment:
Q  1 tccgacgagattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcat 100  Q
    |||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28175256 tccgacaagattagatcaagagccaccc--------gattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcat 28175165  T
Q  101 ataattcgaccgtcaagcaagtagtaaaactcaacaaccaatcacctttattgtttcttgtaagacctctaaaacctaaagtctttgattgttttgccct 200  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28175164 ataatttgaccgtcaagcaagtagtaaaacccaacaacccatcaccattattgtttcttgtaagacctctaaaacctaaagtctttgattgttttgccct 28175065  T
Q  201 agttaactgcatcattc 217  Q
    |||||||||||||||||    
T  28175064 agttaactgcatcattc 28175048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 35946854 - 35946972
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    |||||||||||||| || || |||||  |||||||||||||||||||| |  || ||||||||| ||| || |||||| ||||||||| |||  ||||||    
T  35946854 gattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcatacgcaatacaaaggtcttgaaaaatgacatgcaattcg 35946953  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||||||| |||| |||||    
T  35946954 gccgtcaaacaagaagtaa 35946972  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 26292391 - 26292503
Alignment:
Q  15 atcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcgaccgtc 114  Q
    ||||||||||  ||||||||| |||||||||||||||||||| |  |||||||||||| ||| ||||||| |||||||||||||||| |||||| ||| |    
T  26292391 atcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatacgcaatacgaaggccatgaaaaatggcatacaattcggccgcc 26292490  T
Q  115 aagcaagtagtaa 127  Q
    ||||||| |||||    
T  26292491 aagcaagaagtaa 26292503  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 7022784 - 7022666
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||||||| |  || ||| ||||| ||| ||||||| ||||||||||| |||| ||||||    
T  7022784 gattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatacgcaatacgaaggccatgaaaaatgacatacaattcg 7022685  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||||||| |||||    
T  7022684 gccgccaagcaagaagtaa 7022666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 34252272 - 34252154
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| |||||||||  | ||||||||||||||| | |  ||||||||||||  || ||||||| |||||||||||||||| ||||||    
T  34252272 gattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcatacgtaatacgaaggccatgaaaaatggcatacaattcg 34252173  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||||||| |||||    
T  34252172 gccgccaagcaagaagtaa 34252154  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 10570605 - 10570531
Alignment:
Q  18 aagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaa 92  Q
    |||||||| ||||||||| ||||||||||||||||||| ||  || ||||||||| ||| ||||||  |||||||    
T  10570605 aagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaagaccatgaaa 10570531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 19816443 - 19816561
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||| ||||||  || ||||||||  ||| ||||||| |||||||||| ||||| |||||     
T  19816443 gattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatgcaatacgaaggccatgaaaaatagcatacaattca 19816542  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||||||| |||||    
T  19816543 gccgccaagcaagaagtaa 19816561  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 29018711 - 29018829
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||| |  || |||||| |||||| ||||||| |||||||||||||||| |||| |    
T  29018711 gattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacacacaatacgaaggccatgaaaaatggcatacaatttg 29018810  T
Q  109 accgtcaagcaagtagtaa 127  Q
     | | |||||||| |||||    
T  29018811 gcagccaagcaagaagtaa 29018829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 55429053 - 55429152
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatg-aaaaatggcatataattc 107  Q
    ||||| ||||| ||||| ||| ||||| |||||||||||||||||||| |  || ||||||||| ||| ||||||| | || |||||||||||| |||||    
T  55429053 gattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatacgcaatacgaaggccgtgcaaaaatggcatacaattc 55429152  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 29763257 - 29763154
Alignment:
Q  4 gacgagattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatata 103  Q
    |||| ||||| ||||||||||||||||| |||  ||||||||||||||||| | | |||  ||||||||  || ||||||||||||||||||| ||||||    
T  29763257 gacgtgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcatacgtaatacgaaggtcatgaaaaatgacatata 29763158  T
Q  104 attc 107  Q
    ||||    
T  29763157 attc 29763154  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 15917354 - 15917472
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| |||| |||| |||||||||||||||||| | |  || ||||||||| ||| ||||||| ||||||||||| |||| |||| |    
T  15917354 gattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatacgcaatacgaaggccatgaaaaatgacatacaatttg 15917453  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||||||| |||||    
T  15917454 gccgccaagcaagaagtaa 15917472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 8567706 - 8567798
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcata 101  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||   |  || ||||||||| ||| ||||||| | ||||||||| ||||    
T  8567706 gattagatcaaaagccaccatagaatctgattcaagaataatgttcccttgacccgcatcatacgcaatacgaaggccgtgaaaaatgacata 8567798  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 5171224 - 5171106
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||||  | |  || ||||||||| ||| || |||| |||||||||||||||| ||||||    
T  5171224 gattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacaaaggccatgaaaaatggcatacaattcg 5171125  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||| ||| |||||    
T  5171124 gccgccaagtaagaagtaa 5171106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 6770982 - 6770864
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| ||||||||||| |||| |||  |||||||||||||||||||| |  || ||||||||| ||| | ||||  ||| |||||||||||| ||||||    
T  6770982 gattaaatcaagagccatcctataatttgattcaagaataatgttcatgtgacccgcatcatacgcaatatgaagaccataaaaaatggcatacaattcg 6770883  T
Q  109 accgtcaagcaagtagtaa 127  Q
     ||| |||||||| |||||    
T  6770882 gccgccaagcaagaagtaa 6770864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 33931596 - 33931705
Alignment:
Q  18 aagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcgaccgtcaag 117  Q
    ||||| || |||| |||| ||||||| |||||||||||| |  || ||||||||| ||| ||||||  ||| |||||||||||| |||||| |||||||     
T  33931596 aagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaagaccataaaaaatggcatacaattcggccgtcaaa 33931695  T
Q  118 caagtagtaa 127  Q
    |||| |||||    
T  33931696 caagaagtaa 33931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 6770842 - 6770791
Alignment:
Q  126 aaaactcaacaaccaatcacctttattgtttcttgtaagacctctaaaacct 177  Q
    ||||| || |||||||||||| |||||||||||| ||||||||| |||||||    
T  6770842 aaaacccagcaaccaatcaccattattgtttcttataagacctccaaaacct 6770791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 5952989 - 5953088
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataattcg 108  Q
    ||||| |||||| |||| ||||||||| ||||||||||||||||||   |  || ||||||||| ||| ||||||| ||||||||||| |||| ||||||    
T  5952989 gattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcg 5953088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 13583506 - 13583464
Alignment:
Q  9 gattagatcaagagccaccctagaatccgattcaagaataatg 51  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  13583506 gattagataatgagccaccctagaatcagattcaagaataatg 13583464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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