View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_364 (Length: 248)

Name: NF11737A_low_364
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_364
NF11737A_low_364
[»] chr4 (2 HSPs)
chr4 (12-232)||(13507630-13507850)
chr4 (12-228)||(13507399-13507615)
[»] scaffold0140 (1 HSPs)
scaffold0140 (12-224)||(36156-36368)
[»] chr1 (2 HSPs)
chr1 (12-215)||(23573463-23573666)
chr1 (81-224)||(31814955-31815098)
[»] chr6 (2 HSPs)
chr6 (81-224)||(7799400-7799543)
chr6 (81-224)||(19398501-19398644)
[»] scaffold0129 (1 HSPs)
scaffold0129 (81-224)||(3442-3585)
[»] chr3 (1 HSPs)
chr3 (75-110)||(51253217-51253252)
[»] chr2 (1 HSPs)
chr2 (81-224)||(22059348-22059491)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 13507850 - 13507630
Alignment:
Q  12 gatggacatcctctatatgttcgtccagcagaagtaagaagagttgaagcatcaccttcgaccgtcacaaagcttccatgtgattgcaattgtgaagaga 111  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13507850 gatggacatcctctatatgttcgtccagtagcggtaagaagagttgaagcatcacctttgactgtcacaaagcttccatgtgattgcaattgtgaagaga 13507751  T
Q  112 tgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagttcaaatactcaaggaagaaggcaaatttgtt 211  Q
    ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||||    
T  13507750 tgccgaaaaacattactggaataatgaaggatttcagaataaacaaaaacgagaagctaaagaagaagctccaatactcaaggaagaaggcaaatttgtt 13507651  T
Q  212 tatgattttgttgtgatgtcc 232  Q
    |||||||||||||||||||||    
T  13507650 tatgattttgttgtgatgtcc 13507630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 13507399 - 13507615
Alignment:
Q  12 gatggacatcctctatatgttcgtccagcagaagtaagaagagttgaagcatcaccttcgaccgtcacaaagcttccatgtgattgcaattgtgaagaga 111  Q
    |||||||||||||  |||||||||| || ||  ||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  13507399 gatggacatcctccgtatgttcgtctagtagcggtaagaatagctgaagcatcaccttcgacggtcacaaagcttccacgtgattgcaattgtgaagaga 13507498  T
Q  112 tgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagttcaaatactcaaggaagaaggcaaatttgtt 211  Q
    |||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||| |||||| || |||||||||||||||| |||||||||||    
T  13507499 tgctgaaagacattactcaaataatgaaggatttcaaaatcaacaaaaacgagaagttaaagaagaagctctaatactcaaggaagaatgcaaatttgtt 13507598  T
Q  212 tatgattttgttgtgat 228  Q
    |||| ||||||||||||    
T  13507599 tatggttttgttgtgat 13507615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 36156 - 36368
Alignment:
Q  12 gatggacatcctctatatgttcgtccagcagaagtaagaagagttgaagcatcaccttcgaccgtcacaaagcttccatgtgattgcaattgtgaagaga 111  Q
    ||||||||||||| ||||||| |||||| || ||||||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  36156 gatggacatcctccatatgtttgtccaggagtagtaagaagagcttaagcatcaccttcgaatgtcacaaaacttccatgtgattgcaattgtgaagaga 36255  T
Q  112 tgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagttcaaatactcaaggaagaaggcaaatttgtt 211  Q
    || |||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||| |||||| || |||||||||| |||||||||||||||||    
T  36256 tgttgaaagacattactggaataatgaaggaattcggaatcaacaaaaatgagaagttaaagaagaagctccaatactcaagaaagaaggcaaatttgtt 36355  T
Q  212 tatgattttgttg 224  Q
    |||| || |||||    
T  36356 tatggttatgttg 36368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 23573463 - 23573666
Alignment:
Q  12 gatggacatcctctatatgttcgtccagcagaagtaagaagagttgaagcatcaccttcgaccgtcacaaagcttccatgtgattgcaattgtgaagaga 111  Q
    ||||||||||||  |||||||||||||| || ||||||||||| |||||||||| | |||   || ||||| |||| ||||||||||||||||||||||     
T  23573463 gatggacatcctgcatatgttcgtccaggaggagtaagaagagctgaagcatcatcatcggatgtaacaaaacttcgatgtgattgcaattgtgaagagc 23573562  T
Q  112 tgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagttcaaatactcaaggaagaaggcaaatttgtt 211  Q
    ||||||||||||||||||||||||| || || ||| |||| |||||||| || |||||||| |||||  || |||||||||| |||||||||||||||||    
T  23573563 tgctgaaagacattactggaataatcaacgaattcggaatcaacaaaaatgacaagttaaagaagaaactccaatactcaagaaagaaggcaaatttgtt 23573662  T
Q  212 tatg 215  Q
    ||||    
T  23573663 tatg 23573666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 31815098 - 31814955
Alignment:
Q  81 aagcttccatgtgattgcaattgtgaagagatgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagt 180  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||| |  |||  || |||||||||||||| || ||||||     
T  31815098 aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaacgaagaaaaacgagaagttgaagaagaagc 31814999  T
Q  181 tcaaatactcaaggaagaaggcaaatttgtttatgattttgttg 224  Q
    |  || | |||||||||||| | || ||||||||| ||||||||    
T  31814998 tacaacattcaaggaagaagacgaacttgtttatggttttgttg 31814955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 7799543 - 7799400
Alignment:
Q  81 aagcttccatgtgattgcaattgtgaagagatgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagt 180  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||| |||| |||||  |||| || ||||| |||||||| || ||||||     
T  7799543 aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttgactgtgatattgaaagatttgggaatcaagaaaaatgagaagttgaagaagaagc 7799444  T
Q  181 tcaaatactcaaggaagaaggcaaatttgtttatgattttgttg 224  Q
    |  || | |||||||||||| | || ||||||||| ||||||||    
T  7799443 tacaacattcaaggaagaagacgaacttgtttatggttttgttg 7799400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 19398644 - 19398501
Alignment:
Q  81 aagcttccatgtgattgcaattgtgaagagatgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagt 180  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||| |||| |||||  |||| || ||||| ||||| || || ||||||     
T  19398644 aagcttccatgtgattgcaattgtgaagtggtgatgaaagatttaactgtgatattgaaagatttgggaatcaagaaaaatgagaatttgaagaagaagc 19398545  T
Q  181 tcaaatactcaaggaagaaggcaaatttgtttatgattttgttg 224  Q
    |  || | |||||||||||| | || ||||||||| ||||||||    
T  19398544 tacaacattcaaggaagaagacgaacttgtttatggttttgttg 19398501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 3585 - 3442
Alignment:
Q  81 aagcttccatgtgattgcaattgtgaagagatgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagt 180  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||| |  |||| || |||||||||||||| || ||||||     
T  3585 aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc 3486  T
Q  181 tcaaatactcaaggaagaaggcaaatttgtttatgattttgttg 224  Q
    |  || | |||||||||||| | || ||||||||| ||||||||    
T  3485 tacaacattcaaggaagaagacgaacttgtttatggttttgttg 3442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 51253217 - 51253252
Alignment:
Q  75 gtcacaaagcttccatgtgattgcaattgtgaagag 110  Q
    ||||||||||||||||||||||||||||||||||||    
T  51253217 gtcacaaagcttccatgtgattgcaattgtgaagag 51253252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 22059491 - 22059348
Alignment:
Q  81 aagcttccatgtgattgcaattgtgaagagatgctgaaagacattactggaataatgaaggatttcagaataaacaaaaacgagaagttaaacaagaagt 180  Q
    |||||||||||||||||||||||||||| | || |||||||  | ||||  ||  |||| ||| |  |||| || |||||||||||||| || ||||||     
T  22059491 aagcttccatgtgattgcaattgtgaagtggtgatgaaagagttgactgtgatgttgaaagatctgggaatgaagaaaaacgagaagttgaagaagaagc 22059392  T
Q  181 tcaaatactcaaggaagaaggcaaatttgtttatgattttgttg 224  Q
    |  || | |||||||||||| | || ||||||||| ||||||||    
T  22059391 tacaacattcaaggaagaagacgaacttgtttatggttttgttg 22059348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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