View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_365 (Length: 248)
Name: NF11737A_low_365
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_365 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 9523336 - 9523567
Alignment:
| Q |
1 |
attttgtgagataggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagtaatccgtattaagtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
9523336 |
attttgtgagataggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaaaatattaccggagtaatccgtattaagtgt |
9523435 |
T |
|
| Q |
101 |
gccgtgtgccccaattttgacctatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagta |
200 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9523436 |
gccgtgtgccccgattttgacttatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagta |
9523535 |
T |
|
| Q |
201 |
accattactttcaaatgttttcctttgatgtc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9523536 |
accattactttcaaatgttttcctttgatgtc |
9523567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 9495531 - 9495757
Alignment:
| Q |
13 |
aggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagtaatccgtattaagtgtgccgtgtgcccc |
112 |
Q |
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| T |
9495531 |
aggtcaaggagcaggtgaagcgaaaagggctttgtatcattgcaattactgtaataaagatattacaggaaaaatccgtatcaagtgtgccaagtgccca |
9495630 |
T |
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| Q |
113 |
aattttgacctatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcag-------taaccat |
205 |
Q |
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| T |
9495631 |
gattttgacttatgtattgagtgcttttctgttggagctgaggtgacaccccacaaaagcaatcataattacagggtcatggtcagtaaccactaaccat |
9495730 |
T |
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| Q |
206 |
tactttcaaatgttttcctttgatgtc |
232 |
Q |
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| T |
9495731 |
tactttcaaatgttttcctttgatgtc |
9495757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23045938 - 23045714
Alignment:
| Q |
1 |
attttgtgagataggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagtaatccgtattaagtgt |
100 |
Q |
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|||||||||| |||||||||||| || ||||||||| || | |||||||||||||||||||||| |||||||| ||| |||||| ||||||||| |
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| T |
23045938 |
attttgtgagtcaggtcaaggagctggggaagcaaaaaggcatttgtatcattgcaattactgtaatttcgatattacaggaaaaatccggattaagtgt |
23045839 |
T |
|
| Q |
101 |
gccgtgtgccccaattttgacctatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatggtcagta |
200 |
Q |
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| T |
23045838 |
gtcgtgtgctcagatttcgacttatgtgttgagtgcttttcggttggagctgagctgacaccccacaaaagcaatcatgcttacagggtcatggtcagta |
23045739 |
T |
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| Q |
201 |
accattactttcaaatgttttcctt |
225 |
Q |
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|||||||||||||||| |||||||| |
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| T |
23045738 |
accattactttcaaatattttcctt |
23045714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 22513708 - 22513524
Alignment:
| Q |
1 |
attttgtgagataggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagtaatccgtattaagtgt |
100 |
Q |
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|||||||||| | |||||||||| |||||||| ||| ||||||||||||||||| |||| ||||| || ||| |||| ||| |||||| ||||||||| |
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| T |
22513708 |
attttgtgagtcatgtcaaggagcgggtgaagcgaaaagggctctgtatcattgccattattgtaataacgatcttacaggacaaatccggattaagtgt |
22513609 |
T |
|
| Q |
101 |
gccgtgtgccccaattttgacctatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattaca |
185 |
Q |
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| T |
22513608 |
gccgtgtgcccagattttgacttatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgcttaca |
22513524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 22513335 - 22513515
Alignment:
| Q |
13 |
aggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaagatattactggagtaatccgtattaagtgtgccgtgtgcccc |
112 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||| || | || |||||| |||||||||| ||||||||| |
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| T |
22513335 |
aggtcaaggagcgggtgaagcaaaaagggctctgtatcattgcaattattgtaataaagatcttgcaagacaaatccggattaagtgtgtcgtgtgccca |
22513434 |
T |
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| Q |
113 |
aattttgacctatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatgattacagggtcatg |
193 |
Q |
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| T |
22513435 |
gattttgacttatgtgttgagtgcttttctgttggaactgaggtgacaccccacaaaagcaatcatgcttatagggtcatg |
22513515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 36861181 - 36861225
Alignment:
| Q |
134 |
tgcttttctgttggagctgagctgacaccccacaaaagcaatcat |
178 |
Q |
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| T |
36861181 |
tgcttttctgttggtgctgaggtgacacctcataaaagcaatcat |
36861225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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