View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_367 (Length: 248)
Name: NF11737A_low_367
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_367 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 15196220 - 15196455
Alignment:
| Q |
19 |
catcagtggttccccattgttcagtatttacgata------ttgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaat |
112 |
Q |
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| T |
15196220 |
catcagtggttccccattgttcagtatttatgatattgatattgatattggttggggaagtcctgtggcgattcgaagtggtagttcaaataaaagtaat |
15196319 |
T |
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| Q |
113 |
ggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgactctgagt |
212 |
Q |
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| T |
15196320 |
ggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctgact |
15196419 |
T |
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| Q |
213 |
taaacatgactgatgcatccatttggaacctcgatc |
248 |
Q |
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| T |
15196420 |
taaacatgactgatgcatccacttggaaccttgatc |
15196455 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 11968899 - 11968810
Alignment:
| Q |
99 |
caaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttgga |
189 |
Q |
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| T |
11968899 |
caaataaaaaaaatggaaagattagtgtctttcctg-tgtagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttgga |
11968810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 6500451 - 6500380
Alignment:
| Q |
120 |
ttagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaag |
191 |
Q |
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| T |
6500451 |
ttagtgtatttgctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaag |
6500380 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 8999028 - 8998938
Alignment:
| Q |
84 |
ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttcc |
174 |
Q |
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| T |
8999028 |
ttcgaagtggcacttcaaataaaagcaatggaaaaattactgtgtttcctggtacagaaaaaggtattatggattttgaagtgtgtcttcc |
8998938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 39082345 - 39082257
Alignment:
| Q |
84 |
ttcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtctt |
172 |
Q |
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| T |
39082345 |
ttcgaagtgggggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctt |
39082257 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 40147524 - 40147617
Alignment:
| Q |
112 |
tggaaagattagtgtgtttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac |
205 |
Q |
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| T |
40147524 |
tggaatgattactgtatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgac |
40147617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 8102399 - 8102323
Alignment:
| Q |
128 |
tttgctggtaaagaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatga |
204 |
Q |
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| T |
8102399 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
8102323 |
T |
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Target: scaffold0190 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 4473 - 4354
Alignment:
| Q |
55 |
tgatattggttggggaagtccagtggcgattcgaagtggtagttcaaataaaagtaatggaaagattagtgtgtttgctggtaaagaagaaggaagtatg |
154 |
Q |
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| T |
4473 |
tgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgtgtatgcaggtgtagaagatggtagcatg |
4374 |
T |
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| Q |
155 |
gactttgaagtttgtcttcc |
174 |
Q |
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| T |
4373 |
gaccttgaagtatgtcttcc |
4354 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 8936278 - 8936344
Alignment:
| Q |
139 |
agaagaaggaagtatggactttgaagtttgtcttccatacaagattttggaagtcatgggaaatgac |
205 |
Q |
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| T |
8936278 |
agaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgac |
8936344 |
T |
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