View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_375 (Length: 247)
Name: NF11737A_low_375
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_375 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 3094365 - 3094130
Alignment:
| Q |
12 |
tggacatcagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
111 |
Q |
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| T |
3094365 |
tggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
3094266 |
T |
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| Q |
112 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
211 |
Q |
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| T |
3094265 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
3094166 |
T |
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| Q |
212 |
tggagaaaatgcctttgaatctattattttctcaat |
247 |
Q |
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| T |
3094165 |
tggagaaaatgcctttgaatctattattttctcaat |
3094130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 3085508 - 3085284
Alignment:
| Q |
23 |
aaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacatt |
122 |
Q |
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| T |
3085508 |
aaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacatt |
3085409 |
T |
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| Q |
123 |
gaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatg |
222 |
Q |
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| T |
3085408 |
gaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaag |
3085309 |
T |
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| Q |
223 |
cctttgaatctattattttctcaat |
247 |
Q |
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| T |
3085308 |
catttgaatctattattttctcaat |
3085284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
63 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
112 |
Q |
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| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
41 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
85 |
Q |
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| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
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