View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_377 (Length: 247)
Name: NF11737A_low_377
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_377 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 32287677 - 32287906
Alignment:
| Q |
18 |
tcatgtggaatgagataactgaataaaatgatccataatattgttaggatccaccgaattaaaaccaatccaagtccgcacttgcatccacaaggaactg |
117 |
Q |
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| T |
32287677 |
tcatgtggaatgagataactgaataaaatgatccataatattgttaggatccatcgaattaaaatcaatccaagtctgcacttgcatccacaaggaactg |
32287776 |
T |
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| Q |
118 |
aataaattgcaatgaatgaacaaattctgagctgattctatgtgaccacaaccactaacacatacatgatcatctgttgaaataatgtgtcatcaagcca |
217 |
Q |
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| T |
32287777 |
aataaattgcaatgaatgaacaaattatgagctgattctatgtgaccacaaccactaacacatacatgatcatatgttgaaataatgtgtcatcaaacca |
32287876 |
T |
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| Q |
218 |
agttatccttagtcgacaatctgttgcgca |
247 |
Q |
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| T |
32287877 |
agttatccttagttggcaatctgttgcgca |
32287906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 19636933 - 19636715
Alignment:
| Q |
28 |
tgagataactgaataaaatgatccataatattgttaggatccaccgaattaaaaccaatccaagtccgcacttgcatccacaaggaactgaataaattgc |
127 |
Q |
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| T |
19636933 |
tgagagaattgagtaaaatgatacataatattattaggatc-accgaattaaaaccaattcaagtccgcacttgcatccatcggaaactgaataaattgc |
19636835 |
T |
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| Q |
128 |
aatgaatgaacaaattctgagctgattctatgtgaccacaaccactaacacatacatgatcatctgttgaaataatgtgtcatcaagccaagttatcctt |
227 |
Q |
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| T |
19636834 |
aatgaaggaacaaatgtggagctgattctatgtgaccgcaaccactaacacaaaaatgatcatttgttgaaataatgcctcatcgaactaagttatcctt |
19636735 |
T |
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| Q |
228 |
agtcgacaatctgttgcgca |
247 |
Q |
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| T |
19636734 |
agtcgacaatctattgcgca |
19636715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 26487365 - 26487554
Alignment:
| Q |
28 |
tgagataactgaataaaatgatccataatattgttaggatccaccgaattaaaaccaatccaagtccgcacttgcatccacaaggaactgaataaattgc |
127 |
Q |
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| T |
26487365 |
tgagagaactgaataaaatgatccataatattattaggatccatcgaattaaaaccaatccaagactgcacttgcatccacaggtaattgaataaattgc |
26487464 |
T |
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| Q |
128 |
aatgaatgaacaaattctgagctgattctatgtgaccacaaccactaacacatacatgatcatctgttgaaataatgtgtcatcaagccaagttatcc |
225 |
Q |
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| T |
26487465 |
aatgaagga--------tgagctgattctatgtgaccgcaaccactaacacaaaaatgatactctgttgaaataatgcctcgtcgagccaagttatcc |
26487554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 47163486 - 47163284
Alignment:
| Q |
28 |
tgagataactgaataaaatgatccataatattgttaggatccaccgaattaaaaccaatccaagtccgcacttgcatccacaaggaactgaataaattgc |
127 |
Q |
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| T |
47163486 |
tgagagaactgaataaaatgatccataatattataaggatccaccgagtaaaaagcaatccacgttcacacttgctttcaaagagaacttaataaattgc |
47163387 |
T |
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| Q |
128 |
aatgaatgaacaaattctgagctgattctatgtgaccacaaccactaacacatacatgatcatctgttgaaataatgtgtcatcaagccaagttatcctt |
227 |
Q |
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| T |
47163386 |
aatgaaggaacaaatgctgagctgattcaatttgaccgcaacagctaccacaaaaatgataaactggtgaaataatgtcgcgtctaaccaagttatcctt |
47163287 |
T |
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| Q |
228 |
agt |
230 |
Q |
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| T |
47163286 |
agt |
47163284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 7552473 - 7552569
Alignment:
| Q |
28 |
tgagataactgaataaaatgatccataatattgttaggatccaccgaattaaaaccaatccaagtccgcacttgcatccacaaggaactgaataaat |
124 |
Q |
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| T |
7552473 |
tgagagaactgaataaaatgatccataatattatgaggatccaccaagtaaaaaccaatccatgtccgcacttgcatacaaagagaactgaataaat |
7552569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 17508381 - 17508344
Alignment:
| Q |
21 |
tgtggaatgagataactgaataaaatgatccataatat |
58 |
Q |
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| T |
17508381 |
tgtggaatgagaaaactgaataaaatgatccataatat |
17508344 |
T |
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