View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_379 (Length: 247)

Name: NF11737A_low_379
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_379
NF11737A_low_379
[»] chr3 (4 HSPs)
chr3 (6-247)||(31141403-31141644)
chr3 (25-136)||(25889642-25889754)
chr3 (13-102)||(37133804-37133894)
chr3 (22-129)||(30046435-30046542)
[»] chr7 (5 HSPs)
chr7 (11-228)||(1716535-1716754)
chr7 (13-136)||(7961783-7961907)
chr7 (41-136)||(11269991-11270087)
chr7 (13-66)||(1103164-1103217)
chr7 (176-228)||(38969274-38969326)
[»] chr4 (8 HSPs)
chr4 (13-145)||(27272577-27272711)
chr4 (6-123)||(10395962-10396080)
chr4 (22-123)||(29235134-29235236)
chr4 (6-86)||(53469703-53469783)
chr4 (13-152)||(53472525-53472663)
chr4 (13-119)||(32015169-32015276)
chr4 (22-136)||(50887398-50887513)
chr4 (34-137)||(9010408-9010512)
[»] chr2 (5 HSPs)
chr2 (10-91)||(10128504-10128585)
chr2 (6-83)||(8761225-8761303)
chr2 (19-162)||(25550091-25550234)
chr2 (13-86)||(37965530-37965604)
chr2 (18-58)||(15140819-15140859)
[»] chr6 (12 HSPs)
chr6 (42-225)||(11681363-11681548)
chr6 (13-136)||(2921841-2921965)
chr6 (21-136)||(13556003-13556119)
chr6 (13-137)||(11678846-11678967)
chr6 (13-135)||(13557975-13558098)
chr6 (10-86)||(14721712-14721787)
chr6 (13-86)||(2923208-2923282)
chr6 (13-86)||(16910146-16910219)
chr6 (18-86)||(11677133-11677201)
chr6 (8-84)||(22880021-22880097)
chr6 (13-84)||(16403530-16403600)
chr6 (8-84)||(22898136-22898212)
[»] chr8 (2 HSPs)
chr8 (13-131)||(33897216-33897335)
chr8 (44-123)||(42001905-42001985)
[»] chr1 (7 HSPs)
chr1 (6-136)||(24284822-24284953)
chr1 (13-86)||(22827077-22827150)
chr1 (13-86)||(22840975-22841048)
chr1 (43-129)||(12458581-12458668)
chr1 (15-136)||(22826631-22826753)
chr1 (18-96)||(24272758-24272836)
chr1 (117-224)||(12466064-12466172)
[»] chr5 (4 HSPs)
chr5 (13-86)||(32795580-32795653)
chr5 (13-123)||(19670676-19670787)
chr5 (10-78)||(26896583-26896651)
chr5 (13-84)||(32796346-32796417)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-86)||(260215-260283)
[»] scaffold0065 (1 HSPs)
scaffold0065 (36-135)||(34724-34822)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 31141403 - 31141644
Alignment:
Q  6 atcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtttgctatagtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  31141403 atcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaagtaagtttgctataatt 31141502  T
Q  106 ggtattacctctactatttaatatttgtaataattgattatggtgaaattcttttcatgactctgtctgcggattagtcaacacactgatggatactacg 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| || | |||||||||    
T  31141503 ggtattacctctactattcaatatttgtaataattgattatggtggaattcttttcatgactctatctgtggattagtcaacacattgctcgatactacg 31141602  T
Q  206 ctaaatcttgtgtcgtttttattttatactactattattatc 247  Q
    | | ||||||||||||||| ||||| | ||||||||||||||    
T  31141603 ccatatcttgtgtcgttttgattttgtcctactattattatc 31141644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 25889642 - 25889754
Alignment:
Q  25 tatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 123  Q
    ||||||||| ||| | |||||||||||||||||||  ||||||||||||||||||||||||| |||  | |||||||||| | | | |||||||| ||||    
T  25889642 tatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgggttttgctatagctagcagtacctctattatt 25889741  T
Q  124 taatatttgtaat 136  Q
    || | ||||||||    
T  25889742 tagtctttgtaat 25889754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 37133894 - 37133804
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctata 102  Q
    |||| ||| |||||| | ||||||||||| ||| ||||||||||||| || |||||||||||| || ||||||| ||| || |||||||||    
T  37133894 aatatgaaaaaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctata 37133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 30046435 - 30046542
Alignment:
Q  22 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctact 120  Q
    ||||||||||||| ||  |||||||||||||||  ||| |||||||||||||||| | ||||||| |||  | |||||||||| | |  |||||||||||    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttgta-caatagttagtcggttttgctatagctagcgttacctctact 30046533  T
Q  121 atttaatat 129  Q
    ||| |||||    
T  30046534 attcaatat 30046542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 1716754 - 1716535
Alignment:
Q  11 agaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggta 109  Q
    |||||| ||| ||||||| ||||| ||  ||||||||||||| |||||| |||||| ||||||||||| ||||||| ||| || |||  ||||| |||||    
T  1716754 agaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagttagtgagtttttttatagctggta 1716655  T
Q  110 ttacctctactatttaatatttgtaataattgattatggtgaaattcttttc-atgactctgtctgcggattagtcaacacactgatggatactacgcta 208  Q
    |||||||||||||| | ||| | | ||||| |||||| ||| |||||||||| || |||||  | |   ||||||||||||| || ||||||||||| ||    
T  1716654 ttacctctactattcagtatatatgataatcgattatagtggaattcttttcaataactctacccgaaaattagtcaacacattgttggatactacgtta 1716555  T
Q  209 aatcttgtgtcgtttttatt 228  Q
    |||||| |||| ||||||||    
T  1716554 aatcttatgtcatttttatt 1716535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 7961783 - 7961907
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 111  Q
    |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||||||||||||| |||  | |||||||||| | | |||    
T  7961783 aatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcatt 7961882  T
Q  112 acctctactatttaatatttgtaat 136  Q
    || ||||||||| || |||||||||    
T  7961883 acttctactattcaaaatttgtaat 7961907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 11269991 - 11270087
Alignment:
Q  41 catataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatatttgtaat 136  Q
    |||||||||||||| |||| |||||||||||  ||||||||||||| |||  | |||||||||  | || |||||||||||||| | ||||||||||    
T  11269991 catataaataaaagccttgtgtgttagtattagttgcaccaatagttagtgggttttgctataactagtgttacctctactattcagtatttgtaat 11270087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 1103164 - 1103217
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgtta 66  Q
    |||| ||||||||||| ||||| || |||||||||||||||| |||| ||||||    
T  1103164 aatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgtta 1103217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 38969326 - 38969274
Alignment:
Q  176 ggattagtcaacacactgatggatactacgctaaatcttgtgtcgtttttatt 228  Q
    |||||||||| ||||  | ||||||| ||| ||||||||||||||||||||||    
T  38969326 ggattagtcagcacatggctggataccacgttaaatcttgtgtcgtttttatt 38969274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 27272577 - 27272711
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag--tttgctatagttggtat 110  Q
    |||| |||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||| |||  |  |||||||||| | | ||    
T  27272577 aatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagctagcat 27272676  T
Q  111 tacctctactatttaatatttgtaataattgatta 145  Q
    ||| ||||||||| || ||||||||| ||| ||||    
T  27272677 tacttctactattcaaaatttgtaattattaatta 27272711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 10395962 - 10396080
Alignment:
Q  6 atcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtt-tgctatagt 104  Q
    ||||||||| | ||||||||||||||||| |  |||||||||||||||| |||| |||||||||||||||||| ||||||| |||  ||| ||||||||     
T  10395962 atcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggttatgctataga 10396061  T
Q  105 tggtattacctctactatt 123  Q
    |||| || | |||||||||    
T  10396062 tggtgttccttctactatt 10396080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 29235236 - 29235134
Alignment:
Q  22 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagt-atttcttgcaccaatagtaagtaagtttgctatagttggtattacctctact 120  Q
    ||||||||||||| || |||||||||||||| | |||| |||||||| ||||||||||||||||||  ||   |||||||||||||||||||| ||||||    
T  29235236 aaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgtggttttgctatagttggtattacatctact 29235137  T
Q  121 att 123  Q
    |||    
T  29235136 att 29235134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 53469783 - 53469703
Alignment:
Q  6 atcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||||| |||| ||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||| | |||||||    
T  53469783 atcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgaatcaatagt 53469703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 53472663 - 53472525
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtatt 111  Q
    |||| ||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||| ||||||||| || |||  |||| ||||||| | |  ||    
T  53472663 aatacgaagaaatatgcaaagactt-gccatataaataaaagt-ttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgtt 53472566  T
Q  112 acctctactatttaatatttgtaataattgattatggtgaa 152  Q
    |||||||||||| | ||| |||||| || |||||| |||||    
T  53472565 acctctactattcagtatctgtaattatcgattatagtgaa 53472525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 32015169 - 32015276
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 111  Q
    |||||||||| ||||||||||| || || | ||||||||| || ||| |||||||||||||||||||||||||| |||  | |||||||||| || ||||    
T  32015169 aataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctgatatt 32015268  T
Q  112 acctctac 119  Q
    || |||||    
T  32015269 acatctac 32015276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 50887513 - 50887398
Alignment:
Q  22 aaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtattacctctact 120  Q
    ||||||||||||  || |||||||||||||| |||||| | ||| || || ||| ||| |||||| |||  |||| ||||||| | ||||||||||||||    
T  50887513 aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtgggttttgctatagctagtattacctctact 50887414  T
Q  121 atttaatatttgtaat 136  Q
    ||||| ||| ||||||    
T  50887413 atttagtatatgtaat 50887398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 9010512 - 9010408
Alignment:
Q  34 atttagccatataaataaaagtcttgcgtgttagta-tttcttgcaccaatagtaagta-agtttgctatagttggtattacctctactatttaatattt 131  Q
    |||||||| ||||||||||   |||| ||||||||| |||| |||||||||||| |||  | |||| ||||||||||||||||||||  ||| | |||||    
T  9010512 atttagcc-tataaataaagaccttgtgtgttagtaatttcgtgcaccaatagttagtggattttgatatagttggtattacctctagaattcagtattt 9010414  T
Q  132 gtaata 137  Q
    ||||||    
T  9010413 gtaata 9010408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 10128504 - 10128585
Alignment:
Q  10 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagta 91  Q
    ||||||| ||||||||||| ||||| || | ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  10128504 gagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagta 10128585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 8761303 - 8761225
Alignment:
Q  6 atcagagaataggaagaaatatgcaaaga-tttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaat 83  Q
    |||||| |||| ||||||||||||||| | ||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  8761303 atcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaat 8761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 25550091 - 25550234
Alignment:
Q  19 aagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattacctct 117  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||| || |||||| |||  | ||| |||||| |||  |||||| |    
T  25550091 aagaaatatgtaaagatttggccatataaataaaagtcttgtgtg-tagtatttcttggactaatagttagtggattttcctatagctggagttaccttt 25550189  T
Q  118 actatttaatatttgtaataattgattatggtgaaattcttttca 162  Q
    |||||| | ||| |||||| || |||||| ||  |||||||||||    
T  25550190 actattcagtatctgtaattatcgattatagtagaattcttttca 25550234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 37965604 - 37965530
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtctt-gcgtgttagtatttcttgcaccaatagt 86  Q
    |||| ||||||||||||||||| || |  ||||||||||||||||| | ||||||||||||||||||||||||||    
T  37965604 aatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaatagt 37965530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 15140819 - 15140859
Alignment:
Q  18 gaagaaatatgcaaagatttagccatataaataaaagtctt 58  Q
    ||||||||||| |||||||| | ||||||||||||||||||    
T  15140819 gaagaaatatgtaaagatttggtcatataaataaaagtctt 15140859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 11681548 - 11681363
Alignment:
Q  42 atataaataaaagtcttgcgtgttagt-atttcttgcaccaatagtaagtaagtttgctatagttggtattacctctactatttaatatttgtaataatt 140  Q
    |||||||||||||| ||| |||||||| |||||||||| ||||||| |||   ||| ||||||  |||||||||| ||||||| | ||| |||||| |||    
T  11681548 atataaataaaagttttgtgtgttagtaatttcttgcaacaatagttagtggttttactatagcaggtattacctatactattcagtatatgtaatcatt 11681449  T
Q  141 gattatggtgaaattcttttca-tgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttgtgtcgttttt 225  Q
    |||||| ||| |||| ||||||  | || ||   | |||||||||| |||| ||||| |||| ||| |||||||||||||||||||    
T  11681448 gattatagtggaatttttttcagcggctttgctcgtggattagtcagcacattgatgcataccacgttaaatcttgtgtcgttttt 11681363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 2921965 - 2921841
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 111  Q
    |||| |||||||||||||| || || |  |||||||||||||||||  |||||||||||||||||||||||||| |||  | |||||||||| | | |||    
T  2921965 aatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcatt 2921866  T
Q  112 acctctactatttaatatttgtaat 136  Q
    || |||| |||| || |||||||||    
T  2921865 acgtctaatattcaaaatttgtaat 2921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 13556119 - 13556003
Alignment:
Q  21 gaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctac 119  Q
    |||||||||||||  || | |||||||||||||| |||| |||||||||||||||||||||||||| | |  | |||||||||| | | ||||| |||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttctac 13556020  T
Q  120 tatttaatatttgtaat 136  Q
    |||| || |||||||||    
T  13556019 tattcaaaatttgtaat 13556003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 11678846 - 11678967
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagtttgctatagttggtatta 112  Q
    |||| ||||||||||||||||  || | ||| ||||||||| ||||| ||||||||||||||  ||||||||||     | |||||||||||| | ||||    
T  11678846 aatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaatagt---ggattttgctatagttagcatta 11678942  T
Q  113 cctctactatttaatatttgtaata 137  Q
    ||||||||||| | |||||||||||    
T  11678943 cctctactattcagtatttgtaata 11678967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 13558098 - 13557975
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtatt 111  Q
    |||| ||||||||||||||||  || | ||||||||||||||  ||| ||||||||||||| |||||||||||| |||  | |||||||| | | | |||    
T  13558098 aatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattttgctattgctagcatt 13557999  T
Q  112 acctctactatttaatatttgtaa 135  Q
    || ||||||||| || ||||||||    
T  13557998 acttctactattcaaaatttgtaa 13557975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 14721712 - 14721787
Alignment:
Q  10 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| ||||  | | ||||||||||||| |||||||    
T  14721712 gagaatagaaagaaatatgcaaagatttggcc-tataaataaaagccttgtttataagtatttcttgcagcaatagt 14721787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 2923282 - 2923208
Alignment:
Q  13 aataggaagaaatatgcaaa-gatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||| ||||||||||||||| |  || | ||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  2923282 aatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagt 2923208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 16910219 - 16910146
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||| |||| |||||||||||| || ||  ||||||||||||| ||| |||||||||||| |||| ||||||||    
T  16910219 aatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagt 16910146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11677133 - 11677201
Alignment:
Q  18 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    ||||||||||||||||  ||   ||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  11677133 gaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagt 11677201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 22880097 - 22880021
Alignment:
Q  8 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 84  Q
    |||||||||| |||||||||  ||| | || | |||||||||||| || ||| |||||| |||||||||||||||||    
T  22880097 cagagaatagaaagaaatatataaatacttggtcatataaataaaggttttgtgtgttaatatttcttgcaccaata 22880021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 16403530 - 16403600
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 84  Q
    |||| |||||||||||||| || |||| ||||||||||||||||||| |||||  ||||  |||||||||||    
T  16403530 aatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaata 16403600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 22898212 - 22898136
Alignment:
Q  8 cagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 84  Q
    |||||||||| |||||||||  ||| | || | |||||||||||| || ||  |||||| |||||||||||||||||    
T  22898212 cagagaatagaaagaaatatataaatacttggtcatataaataaaggttttttgtgttaatatttcttgcaccaata 22898136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 33897216 - 33897335
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 111  Q
    |||||||||||||||| ||||||||  | |||||||||||||||||| |||||||||||| || |||||||| | |||| | |||| |||||||  ||||    
T  33897216 aataggaagaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagtaggttttgttatagtttatatt 33897315  T
Q  112 acctctactatttaatattt 131  Q
    | ||| |||||| |||||||    
T  33897316 atctccactattcaatattt 33897335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 42001905 - 42001985
Alignment:
Q  44 ataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatt 123  Q
    |||||||||||||||| ||||||||| | |||||||||||||| |||| | |||||||||| | | ||||| |||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctataggtagcattacttctactatt 42001985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 24284822 - 24284953
Alignment:
Q  6 atcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagt 104  Q
    ||||||||||| ||| ||||||||||| |||| || ||||||||||| |  ||| |||||| ||||||||||||||||||| |||  |  || ||||||     
T  24284822 atcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcaccaatagtcagtggatgttactatagc 24284921  T
Q  105 tggtattacctctactatttaatatttgtaat 136  Q
    |||||||| |||||||||||| ||| ||||||    
T  24284922 tggtattagctctactatttagtatctgtaat 24284953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 22827150 - 22827077
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||| |||||||||||||||| ||| | |||||||||||||| |||| |||||  |||||||||||||||||||    
T  22827150 aatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagt 22827077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 22840975 - 22841048
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||| ||||||||||||||||  || | |||| ||||||||| |||| ||||||||||||||||||||||||||    
T  22840975 aatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagt 22841048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 12458581 - 12458668
Alignment:
Q  43 tataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtattacctctactatttaatat 129  Q
    ||||||||||   |||| |||||||||||||||| ||||||||| |||| | ||||||| || ||||||||||||||||||| |||||    
T  12458581 tataaataaagaccttgtgtgttagtatttcttgtaccaatagttagtaggatttgctagagctggtattacctctactattcaatat 12458668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 22826753 - 22826631
Alignment:
Q  15 taggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagt-aagtttgctatagttggtattac 113  Q
    |||||| |||| |||||||  || | |||||||||||||| |||  |||||||||||||||||||||||||| |||  | |||||||||| | | |||||    
T  22826753 taggaaaaaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagctagcattac 22826654  T
Q  114 ctctactatttaatatttgtaat 136  Q
     ||||||||| || |||| ||||    
T  22826653 ttctactattcaaaatttttaat 22826631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 24272758 - 24272836
Alignment:
Q  18 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt 96  Q
    ||||||||||||||||| ||  | ||||| ||||| | |||| |||||||||||||||||||||||||| ||| |||||    
T  24272758 gaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaatagttagtgagttt 24272836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 12466064 - 12466172
Alignment:
Q  117 tactatttaatatttgtaataattgattatggtgaaattcttttc-atgactctgtctgcggattagtcaacacactgatggatactacgctaaatcttg 215  Q
    ||||||| ||||||| |||| ||| ||||| ||| |||||||||| ||| ||||| | | | |||||||| |||| |||||||||| ||| | |||||||    
T  12466064 tactattcaatatttataatcattaattatagtggaattcttttcaatggctctgcccgtgaattagtcagcacattgatggataccacgtttaatcttg 12466163  T
Q  216 tgtcgtttt 224  Q
    || ||||||    
T  12466164 tgccgtttt 12466172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 32795653 - 32795580
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    |||| ||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||| |||||||||    
T  32795653 aatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagt 32795580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 19670676 - 19670787
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaag-tttgctatagttggtatt 111  Q
    |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| |||| ||||||||| |||  | |||||||||| | |  ||    
T  19670676 aatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtgggttttgctatagctagcgtt 19670775  T
Q  112 acctctactatt 123  Q
    ||||||||||||    
T  19670776 acctctactatt 19670787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 26896583 - 26896651
Alignment:
Q  10 gagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgca 78  Q
    ||||||||||||||||||||||||| || ||||||||||||||    ||| ||||||||||||||||||    
T  26896583 gagaataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 32796417 - 32796346
Alignment:
Q  13 aataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaata 84  Q
    |||| ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||| ||||||| ||||    
T  32796417 aatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaata 32796346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 260283 - 260215
Alignment:
Q  18 gaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagt 86  Q
    ||||||||||||||||| |||| || ||||||||||  |||| ||||||||||||||||||||||||||    
T  260283 gaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaatagt 260215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 34724 - 34822
Alignment:
Q  36 ttagccatataaataaaagtcttgcgtgttagtatttcttgcaccaatagtaagtaagttt-gctatagttggtattacctctactatttaatatttgta 134  Q
    |||| |||||||||||||||||||  ||||||||||  | ||||||||||| |||  |||| ||||||| |  |||||| ||||||||||| ||||||||    
T  34724 ttagtcatataaataaaagtcttg--tgttagtattattagcaccaatagttagtgggttttgctatagctaatattacttctactatttagtatttgta 34821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University