View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_381 (Length: 247)

Name: NF11737A_low_381
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_381
NF11737A_low_381
[»] chr8 (3 HSPs)
chr8 (4-231)||(15196486-15196713)
chr8 (18-93)||(38125584-38125660)
chr8 (64-92)||(45183721-45183749)
[»] chr4 (4 HSPs)
chr4 (17-93)||(7209057-7209134)
chr4 (18-93)||(32564829-32564905)
chr4 (17-82)||(4473057-4473123)
chr4 (21-81)||(49030303-49030363)
[»] chr5 (5 HSPs)
chr5 (28-93)||(8564904-8564970)
chr5 (18-85)||(21743014-21743082)
chr5 (18-94)||(32636225-32636302)
chr5 (60-93)||(38972238-38972271)
chr5 (65-93)||(33862734-33862762)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-97)||(143346-143426)
[»] chr2 (8 HSPs)
chr2 (17-92)||(36887320-36887396)
chr2 (20-97)||(33810612-33810690)
chr2 (17-93)||(12457017-12457094)
chr2 (18-93)||(41877554-41877628)
chr2 (18-93)||(19246481-19246558)
chr2 (25-92)||(9154142-9154210)
chr2 (17-93)||(12890264-12890341)
chr2 (20-96)||(14949230-14949307)
[»] chr3 (3 HSPs)
chr3 (17-92)||(42380550-42380626)
chr3 (17-92)||(42409264-42409340)
chr3 (69-97)||(29676596-29676624)
[»] chr1 (4 HSPs)
chr1 (18-91)||(7255134-7255208)
chr1 (51-93)||(28681080-28681122)
chr1 (24-94)||(46836383-46836454)
chr1 (18-95)||(6380148-6380226)
[»] scaffold0064 (1 HSPs)
scaffold0064 (17-96)||(22369-22449)
[»] chr7 (6 HSPs)
chr7 (13-44)||(18121897-18121928)
chr7 (18-92)||(19989079-19989154)
chr7 (18-92)||(28885482-28885557)
chr7 (25-93)||(31448371-31448440)
chr7 (53-93)||(29707536-29707576)
chr7 (25-92)||(32553683-32553751)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 15196486 - 15196713
Alignment:
Q  4 tgtaggctgttacatactccctccgtccctatatgtaagcat-tttttcttctaataaaaatgtgtttagatatagggacggagggagtatttaagaagg 102  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||||||||| |    
T  15196486 tgtaggctgttacatactccctccgtccctatatgtaagcatctttttcttctaataaaagggtgcttagatatagggacggagggagtatttaagaaag 15196585  T
Q  103 agaaagtttatgtctagaatatcctatttgatgttctaatcgatcgatggactttcattcacttgctatttttattaaaaaggtttgtgttttggtttct 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  15196586 agaaagtttatgtctagaatatcctatttgatgttctaatcgatcgatggactttcattcacttgctatttttattaaaaagttttgcgttttggtttct 15196685  T
Q  203 ttgtggattaaagtgcatgcatgtgatgt 231  Q
    ||||||||| |||||||||||||||||||    
T  15196686 ttgtggatt-aagtgcatgcatgtgatgt 15196713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 38125584 - 38125660
Alignment:
Q  18 tactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    |||||||||||||| ||||||||||||  |||| | ||||||||||  ||| ||| |||||||||||||||||||||    
T  38125584 tactccctccgtccatatatgtaagcaccttttgcctctaataaaagggtgcttacatatagggacggagggagtat 38125660  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 45183749 - 45183721
Alignment:
Q  64 tgtgtttagatatagggacggagggagta 92  Q
    |||||||||||||||||||||||||||||    
T  45183749 tgtgtttagatatagggacggagggagta 45183721  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 7209134 - 7209057
Alignment:
Q  17 atactccctccgtccctatatgtaagcattttttct-tctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||| ||| |||||||||||||| ||||||||||    
T  7209134 atactccctccgtccctatatgtaagcactctttgtctctaataaaaaagtgcttagatatagggactgagggagtat 7209057  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 32564829 - 32564905
Alignment:
Q  18 tactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    ||||||||||||||||||||||||||| | ||| | ||||||||||  ||| ||| |||||||||||||||||||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaataaaagggtgcttacatatagggacggagggagtat 32564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4473057 - 4473123
Alignment:
Q  17 atactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggac 82  Q
    |||||| ||||||||||||||||||||| | ||| | ||||||||||| ||| ||| ||||||||||    
T  4473057 atactctctccgtccctatatgtaagcactctttgcctctaataaaaaggtgcttacatatagggac 4473123  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 49030303 - 49030363
Alignment:
Q  21 tccctccgtccctatatgtaagcattttttcttctaataaaaatgtgtttagatataggga 81  Q
    ||||||||||||| ||| |||  |||||| | ||||||||||  |||||||||||||||||    
T  49030303 tccctccgtccctgtatttaaatatttttccctctaataaaagggtgtttagatataggga 49030363  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 8564904 - 8564970
Alignment:
Q  28 gtccctatatgtaagcatttt-ttcttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    |||| |||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||    
T  8564904 gtccttatatgtaagcatttttttcttctaataaaaaggtgcttacatatagggacggagggagtat 8564970  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 21743014 - 21743082
Alignment:
Q  18 tactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggacgga 85  Q
    |||||||||||||| |||||||||||| | ||| | ||||||||||  ||| |||||||||||||||||    
T  21743014 tactccctccgtccttatatgtaagcactctttgcctctaataaaagagtgcttagatatagggacgga 21743082  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 32636225 - 32636302
Alignment:
Q  18 tactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggacggagggagtatt 94  Q
    |||||||||||||| |||||||||  | ||||| | ||||||||||  ||||||| ||||||| |||||| |||||||    
T  32636225 tactccctccgtccttatatgtaaatactttttgcctctaataaaagggtgtttacatataggaacggagagagtatt 32636302  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 38972238 - 38972271
Alignment:
Q  60 aaaatgtgtttagatatagggacggagggagtat 93  Q
    |||||||||||| |||||||||||||||||||||    
T  38972238 aaaatgtgtttacatatagggacggagggagtat 38972271  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 33862762 - 33862734
Alignment:
Q  65 gtgtttagatatagggacggagggagtat 93  Q
    |||||||||||||||||||||||||||||    
T  33862762 gtgtttagatatagggacggagggagtat 33862734  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 143426 - 143346
Alignment:
Q  18 tactccctccgtccctatatgtaagcat-tttttcttctaataaaaatgtgtttagatatagggacggagggagtatttaa 97  Q
    ||||||||||||||||||||||||||||  ||| | ||||||||||  ||||||| |||||||||| |||| |||||||||    
T  143426 tactccctccgtccctatatgtaagcatcctttgcctctaataaaagggtgtttacatatagggacagaggaagtatttaa 143346  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 36887320 - 36887396
Alignment:
Q  17 atactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    ||||||||||||||  |||||||||||||||||| | | ||||||||  ||||||| ||||||||||||||||||||    
T  36887320 atactccctccgtctatatatgtaagcatttttttcctataataaaatggtgtttacatatagggacggagggagta 36887396  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 33810690 - 33810612
Alignment:
Q  20 ctccctccgtccctatatgtaagcatt-ttttcttctaataaaaatgtgtttagatatagggacggagggagtatttaa 97  Q
    |||||||||||||||||||||||||   ||||| ||||||||||  ||| ||| ||||||||||| |||||||||||||    
T  33810690 ctccctccgtccctatatgtaagcacaattttcctctaataaaagggtgcttacatatagggacgaagggagtatttaa 33810612  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 12457094 - 12457017
Alignment:
Q  17 atactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    |||||||||| |||||||||||||||||   ||| | ||||||||||  ||| |||||||||||||||||||||||||    
T  12457094 atactccctctgtccctatatgtaagcaccctttgcctctaataaaagggtgcttagatatagggacggagggagtat 12457017  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 41877628 - 41877554
Alignment:
Q  18 tactccctccgtccctatatgtaagcatt-ttttcttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    ||||||||||||||||||  ||||||| | |||||||||||||||| |||| ||||||||||||||  |||||||||    
T  41877628 tactccctccgtccctat--gtaagcactcttttcttctaataaaagtgtgcttagatatagggacaaagggagtat 41877554  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 19246481 - 19246558
Alignment:
Q  18 tactccctccgtccctatatgtaagcatt-ttttcttctaataaaaa-tgtgtttagatatagggacggagggagtat 93  Q
    ||||||||| ||| ||||||||||||||  ||||| ||||||||||  |||| ||||||||| |||||||||||||||    
T  19246481 tactccctctgtctctatatgtaagcatcattttcctctaataaaaggtgtgcttagatataaggacggagggagtat 19246558  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 9154142 - 9154210
Alignment:
Q  25 tccgtccctatatgtaagcatt-ttttcttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    ||||||||||||||||| ||   ||||| ||||||||||  ||| ||||||||||||||||||||||||    
T  9154142 tccgtccctatatgtaaccacccttttcctctaataaaagggtgcttagatatagggacggagggagta 9154210  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 12890341 - 12890264
Alignment:
Q  17 atactccctccgtccctatatgtaagcatt-ttttcttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    |||||| |||| |||||| |||||||||   ||||| ||||||||||   || |||||||||||||||||||||||||    
T  12890341 atactctctccatccctaaatgtaagcaccattttcctctaataaaaggatgcttagatatagggacggagggagtat 12890264  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 14949307 - 14949230
Alignment:
Q  20 ctccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtattta 96  Q
    ||||||||||| |||||||||||||   ||| | ||||||||||  ||| |||||| |||||||||||||| ||||||    
T  14949307 ctccctccgtctctatatgtaagcaccatttgcctctaataaaagagtgcttagatgtagggacggagggaatattta 14949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 42380550 - 42380626
Alignment:
Q  17 atactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    ||||||| ||||||||||||||||||||   ||| | ||||||||||  || |||||||||||||||||||||||||    
T  42380550 atactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42380626  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 42409264 - 42409340
Alignment:
Q  17 atactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    ||||||| ||||||||||||||||||||   ||| | ||||||||||  || |||||||||||||||||||||||||    
T  42409264 atactccatccgtccctatatgtaagcaccctttgcctctaataaaagggtttttagatatagggacggagggagta 42409340  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 29676624 - 29676596
Alignment:
Q  69 ttagatatagggacggagggagtatttaa 97  Q
    |||||||||||||||||||||||||||||    
T  29676624 ttagatatagggacggagggagtatttaa 29676596  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 7255134 - 7255208
Alignment:
Q  18 tactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggacggagggagt 91  Q
    |||||||||||||||||||||||||||  |||| | ||||||||||  ||| ||| ||||||| |||||||||||    
T  7255134 tactccctccgtccctatatgtaagcacattttccctctaataaaagggtgcttacatataggaacggagggagt 7255208  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 28681122 - 28681080
Alignment:
Q  51 cttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  28681122 cttctaataaaaatgtgtttagatataaggacggagagagtat 28681080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 46836383 - 46836454
Alignment:
Q  24 ctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtatt 94  Q
    |||||||| ||||||||||||  |||| | ||||||||||  ||| ||||||||||||||||| ||||||||    
T  46836383 ctccgtccttatatgtaagcacattttgcctctaataaaagggtgcttagatatagggacggaaggagtatt 46836454  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 6380226 - 6380148
Alignment:
Q  18 tactccctccgtccctatatgtaagcattttttct-tctaataaaaatgtgtttagatatagggacggagggagtattt 95  Q
    |||||||||||| ||| || |||||||  |||| | ||||||||||  ||| ||||||||||||| |||||||||||||    
T  6380226 tactccctccgttcctctaggtaagcaccttttgtctctaataaaagggtgcttagatatagggatggagggagtattt 6380148  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 22449 - 22369
Alignment:
Q  17 atactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtattta 96  Q
    ||||||| |||||||||||| |||||||  |||  | ||||||||||  ||||||| ||||||| ||||||||||||||||    
T  22449 atactccttccgtccctatacgtaagcacctttagcatctaataaaatggtgtttatatataggaacggagggagtattta 22369  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 18121897 - 18121928
Alignment:
Q  13 ttacatactccctccgtccctatatgtaagca 44  Q
    ||||||||||||||||||||||||||||||||    
T  18121897 ttacatactccctccgtccctatatgtaagca 18121928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 19989079 - 19989154
Alignment:
Q  18 tactccctccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    |||||||||||| ||||||||||||||   ||| | ||||||||||  ||| ||||||||||||||||||| ||||    
T  19989079 tactccctccgttcctatatgtaagcaccatttgcctctaataaaatggtgcttagatatagggacggaggaagta 19989154  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 28885482 - 28885557
Alignment:
Q  18 tactccctccgtccctatatgtaagca-ttttttcttctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    ||||| |||||||||||||||||||||   ||||| ||||||||||  ||| ||| ||||| ||||||||||||||    
T  28885482 tactctctccgtccctatatgtaagcaccattttcctctaataaaagggtgcttacatataaggacggagggagta 28885557  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 31448371 - 31448440
Alignment:
Q  25 tccgtccctatatgtaagcatttttt-cttctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    ||||||||||||||||||||   ||| | ||||||||||  ||| |||||||||||||||||| ||||||    
T  31448371 tccgtccctatatgtaagcaccctttgcatctaataaaagggtgcttagatatagggacggagagagtat 31448440  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 29707576 - 29707536
Alignment:
Q  53 tctaataaaaatgtgtttagatatagggacggagggagtat 93  Q
    ||||||||||  ||||||||||| |||||||||||||||||    
T  29707576 tctaataaaatggtgtttagatagagggacggagggagtat 29707536  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 32553751 - 32553683
Alignment:
Q  25 tccgtccctatatgtaagcattttttct-tctaataaaaatgtgtttagatatagggacggagggagta 92  Q
    |||||| |||||||||| |||  ||| | ||||||||||  ||||||| ||||||||||||||||||||    
T  32553751 tccgtctctatatgtaaacatcatttgtctctaataaaagggtgtttacatatagggacggagggagta 32553683  T

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