View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_385 (Length: 246)
Name: NF11737A_low_385
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_385 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 32853424 - 32853659
Alignment:
| Q |
11 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32853424 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
32853523 |
T |
|
| Q |
111 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32853524 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
32853623 |
T |
|
| Q |
211 |
gatcattaatcatagtagagaataacttatttgcat |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
32853624 |
gatcattaatcatagtagagaataacttatttgcat |
32853659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 37176560 - 37176795
Alignment:
| Q |
11 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37176560 |
atggacatcatgaatgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaaca |
37176659 |
T |
|
| Q |
111 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagattttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
37176660 |
tgagaagaataatttttatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttt |
37176759 |
T |
|
| Q |
211 |
gatcattaatcatagtagagaataacttatttgcat |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37176760 |
tatcattaatcatagtagagaataacttatttgcat |
37176795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University