View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_387 (Length: 246)
Name: NF11737A_low_387
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_387 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 21447349 - 21447141
Alignment:
| Q |
14 |
ggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctatcgaaggatataaggcgcagagtgagatggtgattgacagtct |
113 |
Q |
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| T |
21447349 |
ggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
21447250 |
T |
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| Q |
114 |
tgataggctaatcactgcctgggaggaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgattaca |
213 |
Q |
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| T |
21447249 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgtatgtcaaaacttgattaca |
21447150 |
T |
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| Q |
214 |
cgtccatta |
222 |
Q |
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|||||||| |
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| T |
21447149 |
tgtccatta |
21447141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 4187 - 4368
Alignment:
| Q |
14 |
ggacatcagagaccagctcttgtgctactgagcatccaagtccaaaacaaatggctatcgaaggatataaggcgcagagtgagatggtgattgacagtct |
113 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4187 |
ggacatcagagactggctcttgtgctactgagcatccaagtccaaaacaaatggctattgaaggatataaggcgcagagtgagatggtgattgacagtct |
4286 |
T |
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| Q |
114 |
tgataggctaatcactgcctgggaggaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
195 |
Q |
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| T |
4287 |
tgataggctaatcactgcctgggaagaacgaaaacagtctgttgttgtcgagggagttcacttgagtctcaactttgttgta |
4368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 40685310 - 40685453
Alignment:
| Q |
56 |
caaaacaaatggctatcgaaggatataaggcgcagagtgagatggtgattgacagtcttgataggctaatcactgcctgggaggaacgaaaacagtctgt |
155 |
Q |
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|||||||||||||| | ||||||| ||||| |||||||| |||||||||||||| || ||||||||||||||| | ||||| ||||| ||| |||| || |
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| T |
40685310 |
caaaacaaatggctgttgaaggattcaaggcccagagtgaaatggtgattgacagcctagataggctaatcacttcatgggaagaacggaaagagtccgt |
40685409 |
T |
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| Q |
156 |
tgttgtcgagggagttcacttgagtctcaactttgttgtatgtc |
199 |
Q |
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| T |
40685410 |
tgttgttgagggtgttcacttgagtctcaactttgttgtatgtc |
40685453 |
T |
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