View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_388 (Length: 246)
Name: NF11737A_low_388
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_388 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3093996 - 3093763
Alignment:
| Q |
1 |
tctagaatgaatccacccctgagtgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaact |
100 |
Q |
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| T |
3093996 |
tctagaatgaatccacccctgaatgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaact |
3093897 |
T |
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| Q |
101 |
ttgagaattgaccaatctgcattggtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctc |
200 |
Q |
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| T |
3093896 |
ttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctc |
3093797 |
T |
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| Q |
201 |
acattcgtgacaatgttgacaatctgatgtccat |
234 |
Q |
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| T |
3093796 |
acattcgtgacaatgttgacaatctgatgaccat |
3093763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 3085147 - 3084999
Alignment:
| Q |
4 |
agaatgaatccacccctgagtgcttcttggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttg |
103 |
Q |
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||||||||||||||||| | ||||||||||| ||||| || |||||| ||||||||||||||||||||| | | || ||||||||||||||||||||| |
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| T |
3085147 |
agaatgaatccaccccttaaagcttcttggtctaggctttctatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttg |
3085048 |
T |
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| Q |
104 |
agaattgaccaatctgcattggtaatatttgtgagcaaattaaaaataa |
152 |
Q |
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| T |
3085047 |
agaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataa |
3084999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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