View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_389 (Length: 246)
Name: NF11737A_low_389
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_389 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 21637437 - 21637239
Alignment:
| Q |
32 |
gttgatacacccttgttccactgctgaattgtcaaaagaaagaataaaaaatagaccctggtgacatggaaaa-gactgatttatccctcaatctctaaa |
130 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |
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| T |
21637437 |
gttgatacacccttgtaccactactgacttgtcaaaagaaagaataaaaaatagaccctagtgacatggaaaaagactgatttttccctcaatctctaaa |
21637338 |
T |
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| Q |
131 |
ctcgttctaccatctctctctttccctcaacaacggtgaccaatttcctctcttaaccaacaaccacgatctcctctcccttaaccatcattacaatct |
229 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21637337 |
ctcattctaccatctctctctttccctcaacaacggttaccactttcctctcttaaccaacaaccacgatctcctctccctcaaccatcattacaatct |
21637239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 32 - 229
Target Start/End: Complemental strand, 43499508 - 43499311
Alignment:
| Q |
32 |
gttgatacacccttgttccactgctgaattgtcaaaagaaagaataaaaaatagaccctggtgacatggaaaagactgatttatccctcaatctctaaac |
131 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| |
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| T |
43499508 |
gttgatacacccttgtaccactgctgacttgtcaaaagaaagaataaaaaatagatcccagtgacatggaaaagactgatttttccctcaatctctaaac |
43499409 |
T |
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| Q |
132 |
tcgttctaccatctctctctttccctcaacaacggtgaccaatttcctctcttaaccaacaaccacgatctcctctcccttaaccatcattacaatct |
229 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
43499408 |
tcattctaccgtctctctctttccctcaacaacggtgaccaatttcctctattaaccaacaaccacgatctcctctctctcaaccatcattacaatct |
43499311 |
T |
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