View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_39 (Length: 444)
Name: NF11737A_low_39
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_39 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 4179286 - 4178852
Alignment:
| Q |
9 |
gatggacatcaatttagaaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctg |
108 |
Q |
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| T |
4179286 |
gatggacatcaatttagaaatcgatgatgattctaagaacgatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctg |
4179187 |
T |
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| Q |
109 |
atacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaattt |
208 |
Q |
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| T |
4179186 |
gtacagaaagctataagttcgacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaattt |
4179087 |
T |
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| Q |
209 |
ttacaaatgttggcaactgtgactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatag |
308 |
Q |
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| T |
4179086 |
ttacaaatgttggcaactgtgactctgtctgcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatag |
4178987 |
T |
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| Q |
309 |
cataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgca |
408 |
Q |
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| T |
4178986 |
cataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgca |
4178887 |
T |
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| Q |
409 |
aaatatcgcataaagtttatagatttcatgcatgc |
443 |
Q |
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| T |
4178886 |
aaatatcgcataaagtttatagatttcatgcatgc |
4178852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 32 - 444
Target Start/End: Complemental strand, 4168339 - 4167924
Alignment:
| Q |
32 |
atgatgattctaagaac---gatgaacaaaaggttccactcctgcggaatgcggaggttccagaagcagagaggagcctgatacagaaagctataagttc |
128 |
Q |
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| T |
4168339 |
atgatgattctaagaacaaggatgaacacaaggttccactactgctaaatgcagaggttccagaagcaaagagaaacttgatacaaacagctataagttt |
4168240 |
T |
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| Q |
129 |
gacatttcaaagcacggcgcatttggcaaaccttctacctacaggcactgttctggctttccaacttttgtcaccaatttttacaaatgttggcaactgt |
228 |
Q |
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| T |
4168239 |
gacatttcagagcacggcacatttagcaaaccttctacctacaggcactgtccttgcattacaacttttatcaccaatctttacaaatattggcagctgt |
4168140 |
T |
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| Q |
229 |
gactctgtcagcaagtccatgacttctgtacttgtgactctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaagggga |
328 |
Q |
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| T |
4168139 |
gactctgtcagcaagtggatgactgctgcacttgtgactctctgtggtgcatcatgctttctgctaagctttactgatagctttagagacagcaagggta |
4168040 |
T |
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| Q |
329 |
atatttgttatgggtttgccaccttcaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttat |
428 |
Q |
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| T |
4168039 |
atattatttatgggtttgccacctttaagggcttgtgggttattgatggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttat |
4167940 |
T |
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| Q |
429 |
agatttcatgcatgca |
444 |
Q |
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| T |
4167939 |
agattttatgcatgca |
4167924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 444
Target Start/End: Original strand, 34944370 - 34944546
Alignment:
| Q |
268 |
ctatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtggg |
367 |
Q |
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| T |
34944370 |
ctatgtggtgcctcatgcttcctactatgcttcactgatagcttcaaagacaataaagggaacatatgttatggatttgccacatttaaaggcttatgga |
34944469 |
T |
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| Q |
368 |
ttattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgca |
444 |
Q |
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| T |
34944470 |
tcattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgca |
34944546 |
T |
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