View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_397 (Length: 244)
Name: NF11737A_low_397
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_397 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1483226 - 1483461
Alignment:
| Q |
1 |
gtatgttgtaatacatgaatatcttaaacttctagatttgaaagttaacaagaatgcacccactggtctaacaacatgttaaaagtgctatttaatgaat |
100 |
Q |
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| T |
1483226 |
gtatgttgtaatacatgcatatcttaaacttctagatttgaaagttaacaagaatgtacccactggtctaaaaacatgttaaaagagctatttaatgaat |
1483325 |
T |
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| Q |
101 |
aatgaggttttccggaataaaattgttttggtgcttctattggaagtttaagaaaagaagctcagagaagatcttaaaagggaaatatataataaaagga |
200 |
Q |
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| T |
1483326 |
aatgaggttttccggaataaaattgttttggtgcttctattggaagtttaagaaaagaagctcagagaagatcttaaaagggaaatatataataaaagga |
1483425 |
T |
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| Q |
201 |
cctgttttcaaagcttataaatgattatgatgtcca |
236 |
Q |
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| T |
1483426 |
cctgttttcaaagcttataaatgattatgatgtcca |
1483461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 1443124 - 1443245
Alignment:
| Q |
114 |
ggaataaaattgttttggtgcttctattggaagtttaagaaaagaagctcagagaagatcttaaaagggaaatatataataaaaggacctgttttcaaag |
213 |
Q |
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|||||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||| ||||||| | ||||||||||||| ||| || |||||||||| |
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| T |
1443124 |
ggaataaaattgttttactgcttttatctgaagtttaagaaaagaagcttagaaaagttcttaaa-gagaaatatataatagaagcacttgttttcaaac |
1443222 |
T |
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| Q |
214 |
cttataaatgattatgatgtcca |
236 |
Q |
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| T |
1443223 |
cttataaaagattatgatgtcca |
1443245 |
T |
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