View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_399 (Length: 244)
Name: NF11737A_low_399
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_399 |
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| [»] scaffold0029 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 7779728 - 7779509
Alignment:
| Q |
22 |
atacgacttatggtttgtactcgtaagttaggactttcatcaaatgtatgagaccttgctttaatataattcattcaaacaaaattcatgttgtaatttt |
121 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7779728 |
atacgacttatggtttgtactcgtcagttaggactttcatcagatgtatgagaccgtgctttaatataattcattcaaacaaaattcatgttgtaatttt |
7779629 |
T |
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| Q |
122 |
aatctatccggtctcttatgactaacacccgactattctagatagtttagtatgggcattacattgggcagaacaattaaagcactgcaatcactctcaa |
221 |
Q |
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| T |
7779628 |
aatctatccggtctcttatgactaacacccgactattctagatagtttagtatgggcattacattgggcagaacaattaaagcacgacaatcactctcaa |
7779529 |
T |
|
| Q |
222 |
tcttttcctttatttgtttt |
241 |
Q |
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|||||||||||||||||||| |
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| T |
7779528 |
tcttttcctttatttgtttt |
7779509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 3738171 - 3738271
Alignment:
| Q |
56 |
tttcatcaaatgtatgagaccttgctttaatataattcattcaaacaaaattcatgttgtaattttaatctatccggtctcttatgactaacacccgact |
155 |
Q |
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|||||||| |||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||| |||||| |||||| |
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| T |
3738171 |
tttcatcagatgtataagactgtgctctaatataattcattcagacaaaattcatgttgtaattttaatgtatctggtatcttatatctaacatccgact |
3738270 |
T |
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| Q |
156 |
a |
156 |
Q |
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| T |
3738271 |
a |
3738271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 2978926 - 2978890
Alignment:
| Q |
207 |
tgcaatcactctcaatcttttcctttatttgtttttc |
243 |
Q |
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| T |
2978926 |
tgcaatcattctcaatcttttcttttatttgtttttc |
2978890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 33125656 - 33125779
Alignment:
| Q |
18 |
tcagatacgacttatggtttgtactcgtaagttaggacttt-catcaaatgtatgagaccttgctttaatataattcatt-caaacaaaattcatgttgt |
115 |
Q |
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| T |
33125656 |
tcagatacggcttatggtttgtactcgtcaattagcatttttcctcagatgtatgagactgtgcttgaatataattcatttcagacaaaattcatgttgt |
33125755 |
T |
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| Q |
116 |
aattttaatctatccggtctctta |
139 |
Q |
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| T |
33125756 |
aattttaatatatccagtatctta |
33125779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 40745 - 40845
Alignment:
| Q |
56 |
tttcatcaaatgtatgagaccttgctttaatataattca-ttcaaacaaaattcatgttgtaattttaatctatccggtctcttatgactaacacccgac |
154 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| ||||| || ||||||| ||||||||||| |
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| T |
40745 |
tttcatcagatgtatgagactgtgctttaatataattcatttcggacaaaattcatgttgtaa-tttaatatatccagtatcttatgtttaacacccgac |
40843 |
T |
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| Q |
155 |
ta |
156 |
Q |
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|| |
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| T |
40844 |
ta |
40845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 13066753 - 13066815
Alignment:
| Q |
183 |
cattgggcagaacaattaaagcactgcaatcactctcaa-tcttttcctttatttgtttttct |
244 |
Q |
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| T |
13066753 |
cattgggcaggacaattaaaaccctgcaatcactcttaaatcttttcctttatttgtttttct |
13066815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 14150395 - 14150435
Alignment:
| Q |
18 |
tcagatacgacttatggtttgtactcgtaagttaggacttt |
58 |
Q |
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| T |
14150395 |
tcagatacaacttatggtttgtactcgtcagttagtacttt |
14150435 |
T |
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