View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_40 (Length: 442)

Name: NF11737A_low_40
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_40
NF11737A_low_40
[»] chr4 (6 HSPs)
chr4 (4-213)||(18251595-18251804)
chr4 (4-213)||(18256354-18256563)
chr4 (53-213)||(23239450-23239610)
chr4 (329-434)||(18251951-18252056)
chr4 (210-252)||(18251840-18251882)
chr4 (396-434)||(13986079-13986117)
[»] chr3 (6 HSPs)
chr3 (49-213)||(53975768-53975932)
chr3 (49-213)||(53980505-53980669)
chr3 (329-434)||(53976121-53976226)
chr3 (206-252)||(53976010-53976056)
chr3 (396-434)||(31197156-31197194)
chr3 (396-434)||(52771119-52771157)
[»] chr1 (5 HSPs)
chr1 (49-213)||(49643361-49643525)
chr1 (49-213)||(49638630-49638794)
chr1 (329-434)||(49643074-49643173)
chr1 (206-252)||(49643238-49643284)
chr1 (216-252)||(51589311-51589347)
[»] scaffold0164 (6 HSPs)
scaffold0164 (53-213)||(24708-24867)
scaffold0164 (53-213)||(29437-29596)
scaffold0164 (329-434)||(18766-18865)
scaffold0164 (329-434)||(29146-29245)
scaffold0164 (206-252)||(18931-18977)
scaffold0164 (206-252)||(29311-29357)
[»] chr8 (4 HSPs)
chr8 (54-213)||(15190761-15190918)
chr8 (54-213)||(15195487-15195644)
chr8 (329-434)||(15191109-15191208)
chr8 (206-252)||(15190998-15191044)
[»] chr6 (2 HSPs)
chr6 (51-192)||(21181819-21181959)
chr6 (396-434)||(26129329-26129367)
[»] scaffold0014 (1 HSPs)
scaffold0014 (396-434)||(97800-97838)
[»] scaffold0013 (1 HSPs)
scaffold0013 (396-434)||(250917-250955)
[»] chr2 (1 HSPs)
chr2 (210-252)||(20044993-20045035)
[»] chr7 (1 HSPs)
chr7 (396-433)||(16254609-16254646)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 18251804 - 18251595
Alignment:
Q  4 agaaaacatggagaagaatcaagagaaagaactgtattatcagtaaatcagttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaa 103  Q
    ||||||| ||||||||||  |||||||| | ||||||||| | | ||||||||||||||||||||||||| |  ||||||||||||||| | ||||||||    
T  18251804 agaaaacttggagaagaagaaagagaaa-atctgtattattattcaatcagttatgagtttgttacaaagtaactatatatagtacaaaggaaaagctaa 18251706  T
Q  104 caaactcttaactaggatacaatcagctagagaaggaacatagtagatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaac-aacaa 202  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  18251705 caaactcttaactaggatacaatcatctagagaaggaacatagtagatactctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaaacta 18251606  T
Q  203 taagaagttta 213  Q
    |||||||||||    
T  18251605 taagaagttta 18251595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 18256563 - 18256354
Alignment:
Q  4 agaaaacatggagaagaatcaagagaaagaactgtattatcagtaaatcagttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaa 103  Q
    ||||||| | ||||||||  |||||||| | ||||||||| | | ||||||||||||||||||||||||| |  ||||||||||||||| | ||||||||    
T  18256563 agaaaacttagagaagaagaaagagaaa-atctgtattattattcaatcagttatgagtttgttacaaagtaactatatatagtacaaaggaaaagctaa 18256465  T
Q  104 caaactcttaactaggatacaatcagctagagaaggaacatagtagatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaac-aacaa 202  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |    
T  18256464 caaactcttaactaggatacaatcatctagagaaggaacatactagatactctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaaacta 18256365  T
Q  203 taagaagttta 213  Q
    |||||||||||    
T  18256364 taagaagttta 18256354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 23239610 - 23239450
Alignment:
Q  53 agttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtagata 152  Q
    ||||||||||||||||||||| |  ||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||    
T  23239610 agttatgagtttgttacaaagtaactatatatagtacaaaggaaaagctaacaaactcttaactaggatacaatcatctagagaaggtacatattagata 23239511  T
Q  153 ctctaggtaagcaaggaaacttgcatagcaagttaagtactaaacaacaataagaagttta 213  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23239510 ctctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaacaataagaagttta 23239450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 18251951 - 18252056
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18251951 catggttcgtggtaacactgttgtaaatggcggtgttaatggttgtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaatgtgtattac 18252050  T
Q  429 gttcat 434  Q
    ||||||    
T  18252051 gttcat 18252056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 18251840 - 18251882
Alignment:
Q  210 tttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18251840 tttatgatggtatcagagcttctctaagctctgttgcgcatcg 18251882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 13986079 - 13986117
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13986079 gatccttcgcaacaacctggtaacgtgtattacgttcat 13986117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 53975932 - 53975768
Alignment:
Q  49 aatcagttatgagtttgttacaaa-ggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagt 147  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| | |||  |||||||||||||||||||||||||||| |||||||||| |||||||    
T  53975932 aatcagttatgagtttgttacaaaaggagctatatatagtacaaatgaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagt 53975834  T
Q  148 agatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53975833 agatactctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaacaataagaagttta 53975768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 53980669 - 53980505
Alignment:
Q  49 aatcagttatgagtttgttacaaa-ggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagt 147  Q
    |||||||||||||||||||||||| |||| ||||||||||||| | | |||  |||||||||||||||||||||||||||| |||||||||| |||||||    
T  53980669 aatcagttatgagtttgttacaaaaggagctatatatagtacagatgaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagt 53980571  T
Q  148 agatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53980570 agatactctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaacaataagaagttta 53980505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 53976121 - 53976226
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53976121 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcatcggttcaggatccgtcgcaacaacctggtaacgtgtattac 53976220  T
Q  429 gttcat 434  Q
    ||||||    
T  53976221 gttcat 53976226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 53976010 - 53976056
Alignment:
Q  206 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  53976010 gaagttcatgatggtatcagagcttctctaagctccgttgcgcatcg 53976056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 31197194 - 31197156
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31197194 gatccttcgcaacaacctggtaacgtgtattacgttcat 31197156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 52771119 - 52771157
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  52771119 gatccttcgcaacaacctggtaacgtgtattacgttcat 52771157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 49643361 - 49643525
Alignment:
Q  49 aatcagttatgagtttgttacaaa-ggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagt 147  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||| | |||  |||||||||||||||||||||||||||| |||||||||| |||||||    
T  49643361 aatcaggtatgagtttgttacaaaaggagctatatatagtacaaatgaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagt 49643459  T
Q  148 agatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49643460 agatactctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaacaataagaagttta 49643525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 49638630 - 49638794
Alignment:
Q  49 aatcagttatgagtttgttacaaa-ggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagt 147  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||| | |||  |||||||||||||||||||||||||||| |||||||||| |||||||    
T  49638630 aatcaggtatgagtttgttacaaaaggagctatatatagtacaaatgaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagt 49638728  T
Q  148 agatactctaggtaagcaaggaaacttgcatagcaagttaagtactaaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  49638729 agatactctaggtaagcaaggaaacttgcacaacaagttaagtactaaacaacaataagaagttta 49638794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 49643173 - 49643074
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  49643173 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctg------caccggttcaggatccgtcgcaacaacctggtaacgtgtattac 49643080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 49643284 - 49643238
Alignment:
Q  206 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||    
T  49643284 gaagttcatgatggtatcagagcgtctctaagctctgttgcgcatcg 49643238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 51589311 - 51589347
Alignment:
Q  216 atggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  51589311 atggtatcagagcttttctaagctctgttgcacatcg 51589347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 24708 - 24867
Alignment:
Q  53 agttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtagata 152  Q
    |||||||||||||||||||  ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24708 agttatgagtttgttacaa--gagctatatatagtacaaaagaaaaaataacaaactcttaactaggatacaatcatctagagaaggaacatagtagata 24805  T
Q  153 ctctaggtaagcaaggaaacttgcatagcaagttaagtactaaac-aacaataagaagttta 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  24806 ctctaggtaagcaaggaaacttgcacagcaagttaagtactaaacaaactataagaagttta 24867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 29437 - 29596
Alignment:
Q  53 agttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtagata 152  Q
    |||||||||||||||||||  ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  29437 agttatgagtttgttacaa--gagctatatatagtacaaaagaaaaaataacaaactcttaactaggatacaatcatctagagaaggtacatagtagata 29534  T
Q  153 ctctaggtaagcaaggaaacttgcatagcaagttaagtac-taaacaacaataagaagttta 213  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  29535 ctctaggtaagcaaggaaacttgcacagcaagttaagtacttaagcaacaataagaagttta 29596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 18865 - 18766
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||||    
T  18865 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctg------caccggttcaggatccatcgcaacaacctggtaacgtgtattac 18772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 29245 - 29146
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||||    
T  29245 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctg------caccggttcaggatccatcgcaacaacctggtaacgtgtattac 29152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 18977 - 18931
Alignment:
Q  206 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18977 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 18931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 29357 - 29311
Alignment:
Q  206 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29357 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 29311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 15190918 - 15190761
Alignment:
Q  54 gttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtagatac 153  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15190918 gttatgagtttgttacaa--gagctatatatagtacaaaagaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagtagatac 15190822  T
Q  154 tctaggtaagcaaggaaacttgcatagcaagttaagtac-taaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  15190821 tctaggtaagcaaggaaacttgcacagcaagttaagtacttaagcaacaataagaagttta 15190761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 15195644 - 15195487
Alignment:
Q  54 gttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtagatac 153  Q
    ||||||||||||||||||  ||| ||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  15195644 gttatgagtttgttacaa--gagctatatatagtacaaaagaaaaa-taacaaactcttaactaggatacaatcatctagagaaggtacatagtagatac 15195548  T
Q  154 tctaggtaagcaaggaaacttgcatagcaagttaagtac-taaacaacaataagaagttta 213  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  15195547 tctaggtaagcaaggaaacttgcacagcaagttaagtacttaagcaacaataagaagttta 15195487  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 329 - 434
Target Start/End: Original strand, 15191109 - 15191208
Alignment:
Q  329 catggttcgtggtaacactgttgttaatggcggtgttaatggtggtgctggtgctgcaccggttcaggatccgtcgcaacaacctggtaacgtgtattac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||||||||||||||||||||||||||    
T  15191109 catggttcgtggtaacactgttgttaatggcggtgttaatggtggt------gctgcaccggttcaggatccatcgcaacaacctggtaacgtgtattac 15191202  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 15190998 - 15191044
Alignment:
Q  206 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15190998 gaagtttatgatggtatcagagcttctctaagctctgttgcgcatcg 15191044  T

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Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 21181819 - 21181959
Alignment:
Q  51 tcagttatgagtttgttacaaaggaggtatatatagtacaaaaggaaagctaacaaactcttaactaggatacaatcagctagagaaggaacatagtaga 150  Q
    ||||||||||||| ||||||||| |  ||||||||||||||  | ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  21181819 tcagttatgagttagttacaaagtaactatatatagtacaat-gaaaatctaacaaactcttaactaggatataatcatctagagaaggaacatagtaga 21181917  T
Q  151 tactctaggtaagcaaggaaacttgcatagcaagttaagtac 192  Q
     ||||||||| |||| ||||||||||| ||||||||||||||    
T  21181918 aactctaggtcagcatggaaacttgcacagcaagttaagtac 21181959  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 26129329 - 26129367
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26129329 gatccttcgcaacaacctggtaacgtgtattacgttcat 26129367  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 97838 - 97800
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  97838 gatccttcgcaacaacctggtaacgtgtattacgttcat 97800  T

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Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 250955 - 250917
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttcat 434  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  250955 gatccttcgcaacaacctggtaacgtgtattacgttcat 250917  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 20045035 - 20044993
Alignment:
Q  210 tttatgatggtatcagagcttctctaagctctgttgcgcatcg 252  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  20045035 tttaagatggtatcagagcttttctaagctctgttgcgcatcg 20044993  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 16254609 - 16254646
Alignment:
Q  396 gatccgtcgcaacaacctggtaacgtgtattacgttca 433  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16254609 gatccttcgcaacaacctggtaacgtgtattacgttca 16254646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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