View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_408 (Length: 243)
Name: NF11737A_low_408
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_408 |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1079 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 16899230 - 16898994
Alignment:
| Q |
7 |
atggacatcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16899230 |
atggacagcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
16899131 |
T |
|
| Q |
107 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16899130 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgag |
16899031 |
T |
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| Q |
207 |
aaaagatatattttacaccccagaggggctataattg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
16899030 |
aaaagatatattttacaccccagaggggctataattg |
16898994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 18347745 - 18347509
Alignment:
| Q |
7 |
atggacatcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
106 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347745 |
atggacagcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
18347646 |
T |
|
| Q |
107 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18347645 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgag |
18347546 |
T |
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| Q |
207 |
aaaagatatattttacaccccagaggggctataattg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
18347545 |
aaaagatatattttacaccccagaggggctataattg |
18347509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 51701232 - 51701101
Alignment:
| Q |
57 |
gcagggcatagaggggg-aggtcataagcgtctataccgtaaaattgattttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcga---- |
151 |
Q |
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||||||||||||||||| || ||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| || |||||||| ||| |
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| T |
51701232 |
gcagggcatagaggggggagatcataagtgtctatactgtaaaattgattttcgtaagaatgaaatagacatatatggtcaaaacgtaactaacgaatat |
51701133 |
T |
|
| Q |
152 |
atacgaccctaatagaaatgcacacatttgtc |
183 |
Q |
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||||||||||||| |||||||||||||||||| |
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| T |
51701132 |
atacgaccctaattgaaatgcacacatttgtc |
51701101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 51701430 - 51701385
Alignment:
| Q |
18 |
cattgtggtaaaggccgtaatgccagaggaatcattaccgcagggc |
63 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
51701430 |
cattgtgttaaaggccgtaatgccagaggaatctttaccgcagggc |
51701385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 13236746 - 13236982
Alignment:
| Q |
7 |
atggacatcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
106 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13236746 |
atggacagcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
13236845 |
T |
|
| Q |
107 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13236846 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggtgag |
13236945 |
T |
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| Q |
207 |
aaaagatatattttacaccccagaggggctataattg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
13236946 |
aaaagatatattttacaccccagaggggctataattg |
13236982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 198277 - 198500
Alignment:
| Q |
20 |
ttgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattttcgacgtaatgaa |
119 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| || |
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| T |
198277 |
ttgtggtaaaggtcgtaattccagaggaatcattaccgcatggcatagagggggaggtcataagcgcctataccgtaaaatagattttcgacggaatcaa |
198376 |
T |
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| Q |
120 |
aaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggagaaaagatatattt |
219 |
Q |
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|||||||||| |||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
198377 |
aaagacatatctggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgagaagagatatattt |
198476 |
T |
|
| Q |
220 |
tacaccccagaggggctataattg |
243 |
Q |
| |
|
|||| ||||||||||||||||||| |
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| T |
198477 |
tacatcccagaggggctataattg |
198500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 202 - 1
Alignment:
| Q |
7 |
atggacatcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
106 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
202 |
atggacagcatcgttgtggtaaaggtcgtaatgccagaggaatcattaccgcaaggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
103 |
T |
|
| Q |
107 |
tcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggag |
206 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
102 |
tcgacgaaatgaaaaagacatatatggtagaatcgtaaccatagaatacgaccctaatcgaaatgcatacatttgtctcatacactatggggatggtgag |
3 |
T |
|
| Q |
207 |
aa |
208 |
Q |
| |
|
|| |
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|
| T |
2 |
aa |
1 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 33420594 - 33420474
Alignment:
| Q |
123 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttgtctcatacactatggggatggggagaaaagatatattttac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33420594 |
gacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcacacatttatctcatacactatggggatggtgagaaaagatatattttac |
33420495 |
T |
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| Q |
223 |
accccagaggggctataattg |
243 |
Q |
| |
|
||||||||||||||||||||| |
|
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| T |
33420494 |
accccagaggggctataattg |
33420474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 23053452 - 23053585
Alignment:
| Q |
7 |
atggacatcatcattgtggtaaaggccgtaatgccagaggaatcattaccgcagggcatagagggggaggtcataagcgtctataccgtaaaattgattt |
106 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23053452 |
atggacagcatcactgtggtaaaggctgtaatgccagaggaatcgttaccacagggcatagagggagaggtcataagcgtctataccgtaaaattgattt |
23053551 |
T |
|
| Q |
107 |
tcgacgtaatgaaaaagacatatatggtcgaatc |
140 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||| |
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|
| T |
23053552 |
tctacggaatgaaaaagacatatatagtcgaatc |
23053585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 26345819 - 26345889
Alignment:
| Q |
104 |
ttttcgacgtaatgaaaaagacatatatggtcgaatcgtaactatcgaatacgaccctaatagaaatgcac |
174 |
Q |
| |
|
||||||||| ||| ||||||||||||||| | |||||||||||| ||| || |||||||| ||||||||| |
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|
| T |
26345819 |
ttttcgacggaataaaaaagacatatatgattgaatcgtaactagtgaaaacaaccctaatcgaaatgcac |
26345889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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