View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_409 (Length: 243)

Name: NF11737A_low_409
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_409
NF11737A_low_409
[»] scaffold0387 (1 HSPs)
scaffold0387 (6-243)||(4286-4523)
[»] chr2 (3 HSPs)
chr2 (6-241)||(21762155-21762390)
chr2 (7-177)||(12382052-12382222)
chr2 (7-177)||(22947790-22947960)
[»] chr3 (6 HSPs)
chr3 (6-243)||(15916861-15917098)
chr3 (6-210)||(15594621-15594825)
chr3 (6-243)||(41438588-41438825)
chr3 (6-243)||(20441462-20441699)
chr3 (7-177)||(5952532-5952702)
chr3 (7-177)||(46378700-46378870)
[»] chr7 (5 HSPs)
chr7 (6-243)||(16288898-16289135)
chr7 (6-239)||(800039-800272)
chr7 (7-177)||(30371515-30371685)
chr7 (7-177)||(9467979-9468149)
chr7 (7-177)||(16395018-16395188)
[»] scaffold0094 (1 HSPs)
scaffold0094 (6-243)||(36882-37119)
[»] chr5 (8 HSPs)
chr5 (6-243)||(34467009-34467246)
chr5 (7-177)||(36377551-36377721)
chr5 (7-177)||(37002205-37002375)
chr5 (25-177)||(5441806-5441958)
chr5 (7-177)||(11945999-11946169)
chr5 (7-177)||(17955499-17955669)
chr5 (7-177)||(31518704-31518874)
chr5 (7-177)||(15786308-15786478)
[»] scaffold0029 (1 HSPs)
scaffold0029 (7-177)||(27576-27746)
[»] scaffold0002 (1 HSPs)
scaffold0002 (7-177)||(304319-304489)
[»] chr6 (1 HSPs)
chr6 (7-177)||(9137992-9138162)
[»] chr1 (1 HSPs)
chr1 (7-177)||(5630684-5630854)


Alignment Details
Target: scaffold0387 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 4523 - 4286
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  4523 gatggacatccaggcatcatatagttgcctactaggctgaccctggattcatgaggctggggcagtaacaactacactacatcaaaagttgaagttcgtg 4424  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  4423 aggaataggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcatcgcggctgatagtgttgaagggacgc 4324  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||  |||||||||||| ||||||||||||||||||    
T  4323 cttttcagggatttgccatggaagaagagaataccaag 4286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 21762390 - 21762155
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||    
T  21762390 gatggacattcaggcatcatatagttgcctactgggccgaccctggattcatgaggctggagcagtaacgtctacactgcatcaaaagttgaagttcgtg 21762291  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| | | ||||||||| ||| |||||||||    
T  21762290 aggaatgggaagctagtaactgtgaatggtgaagaggctttgttagtgagccatttgtcgtctttctctttcattggggctgatagtgttgaagggacgc 21762191  T
Q  206 cttttttgggatttgccatcgaagaagagaatacca 241  Q
    |||||  ||||||| |||| |||||||||| |||||    
T  21762190 cttttcagggatttaccatggaagaagagagtacca 21762155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 12382052 - 12382222
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || |||||||||||| |||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| || |    
T  12382052 atggacattcaagcttcatatagttgcttactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtaa 12382151  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  12382152 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 12382222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 22947790 - 22947960
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  22947790 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 22947889  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| ||| |||| ||||||||||||    
T  22947890 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatctgtcatctttctctttc 22947960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 15916861 - 15917098
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||  ||||||| ||||||||||| ||| |||||||||| ||||||    
T  15916861 gatggacattcaggcatcatatagttgcctgctaggccggccctggatccatgaggcgggggcagtgacgtctacactgcatcaaaagttgaaattcgtg 15916960  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||| |||||| || ||| || |||| |    
T  15916961 aggaatgggaagctggtaacagtgaatggtgaagaggctttgttggtgagccatttgtcgtctttctcattcatcggggctgacagtgttgaaaggacac 15917060  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||   |||||| |||| ||||| |||  |||||||    
T  15917061 cttttcaaggattttccatggaagaggagcgtaccaag 15917098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 15594825 - 15594621
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||  ||||||| ||||||||||| ||| |||||||||| ||||||    
T  15594825 gatggacattcaggtatcatatagttgcctgctaggccgaccctggatccatgaggcgggggcagtgacgtctacactgcatcaaaagttgaaattcgtg 15594726  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||  ||| ||| |||||| || ||| ||||||| |    
T  15594725 aggaatgggaagctggtaacagtgaatggtgaagaggctttgttggtgagccatttgtcgtctttcttattcatcggggctgacagtgttgaagggacac 15594626  T
Q  206 ctttt 210  Q
    |||||    
T  15594625 ctttt 15594621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 41438588 - 41438825
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    |||||||||||| ||||| || || || |||||||||||||||||||||||||| ||  ||||||||||||||||  | ||| | ||||| ||||| |||    
T  41438588 gatggacatccaagcatcctacagctgtctactaggccgaccctggattcatgaagcgggggcagtaacgtctaccttgcatcagaagttaaagtttgtg 41438687  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    | |||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||| |||  || ||||| ||| |||||||      
T  41438688 aagaatgggaagctggtaacggtaaatggtgaagaagctttattagtaagtcatttatcgtctttctccttcatcggagccgatagcgttgaagggacat 41438787  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||   ||| ||||||| ||||||||||||||||||    
T  41438788 cttttcaaggacttgccatagaagaagagaataccaag 41438825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 20441462 - 20441699
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    |||||||||||| ||||| || || || |||||||||||||||||||||||||| ||  ||||||||||||||||  | ||| | ||||| ||||| |||    
T  20441462 gatggacatccaagcatcctacagctgtctactaggccgaccctggattcatgaagcgggggcagtaacgtctaccttgcatcagaagttaaagtttgtg 20441561  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    | |||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||| |||  || |||||  || |||||||      
T  20441562 aagaatgggaagctggtaacggtaaatggtgaagaagctttattagtaagtcatttatcgtctttctccttcatcgaagccgatagcattgaagggacat 20441661  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||   ||| ||||||| ||||||||||||||||||    
T  20441662 cttttcaaggacttgccatagaagaagagaataccaag 20441699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 5952702 - 5952532
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  5952702 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacctccacgctgcatcaaaagctgaagtttgtga 5952603  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  5952602 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 5952532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 46378700 - 46378870
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || |||||||||||| |||| || |||||||||||||| |||||  | || || || || || || ||| ||||| ||||||| || |    
T  46378700 atggacattcaagcttcatatagttgcttactgggtcgaccctggattcacgaggcaggagctgtcacatccacgctgcatcaaaagctgaagtttgtaa 46378799  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||| ||||| |||||||| ||||||||||||    
T  46378800 agaatgggaagctagtaactgtaaacggtgaagaggctttattagtgagtcatttgtcatctttctctttc 46378870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 16289135 - 16288898
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    |||||||||||| ||||| || || ||  ||||||||||||||||||||||||| ||  ||||||||||||||||  | ||| | |||||||||||||||    
T  16289135 gatggacatccaagcatcctacagctgtttactaggccgaccctggattcatgaagcgggggcagtaacgtctaccttgcatcagaagttgaagttcgtg 16289036  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| | | |||||| || ||| |||||||||    
T  16289035 aggaatgggaagctagtaactgtgaatggtgaagaggctttgttagtgagccatttgtcgtctttctctttcattggggctgacagtgttgaagggacgc 16288936  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||  ||||||| || | |||||||||| |||||||    
T  16288935 cttttcagggatttaccgtggaagaagagagtaccaag 16288898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 800272 - 800039
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    |||||||||||| ||||| || || ||  ||||||||||||||||||||||||| ||  ||||||||||||||||  | ||| | ||||| ||||| |||    
T  800272 gatggacatccaagcatcctacagctgtttactaggccgaccctggattcatgaagcgggggcagtaacgtctaccttgcatcagaagttaaagtttgtg 800173  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    | |||||||||||||||||| || |||||||| || |||||||| || || ||||| ||||||||||| ||| |||  || ||||| ||| |||||||      
T  800172 aagaatgggaagctggtaacggtaaatggtgaagaagctttattagtaagtcatttatcgtctttctccttcatcggagccgatagcgttgaagggacat 800073  T
Q  206 cttttttgggatttgccatcgaagaagagaatac 239  Q
    |||||   ||| ||||||| || |||||||||||    
T  800072 cttttcaaggacttgccatagaggaagagaatac 800039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 30371685 - 30371515
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || |||||||||||| |||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  30371685 atggacattcaagcttcatatagttgcttactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 30371586  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  30371585 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 30371515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 9467979 - 9468149
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || ||||||||| ||||||| |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| || |    
T  9467979 atggacattcaagcttcgtatagttgcttactaggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtaa 9468078  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  9468079 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 9468149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 16395188 - 16395018
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| || |    
T  16395188 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtaa 16395089  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  16395088 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 16395018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 37119 - 36882
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    ||||||||| |||||||||||||||||||| ||||||||  ||||||| ||||||||  ||||||| |||||||||||  || |||||||||| ||||||    
T  37119 gatggacattcaggcatcatatagttgcctgctaggccgttcctggatccatgaggcgggggcagtgacgtctacactgaatcaaaagttgaaattcgtg 37020  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||| ||| || ||| || ||| ||||||| |    
T  37019 aggaatgggaagctggtaacagtgaatggtgaagaggctttgttggtgagccatttgtcgtctttctcattcatcgaggttgacagtgttgaagggacac 36920  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||   | |||| |||| |||||||||  |||||||    
T  36919 cttttcaagaattttccatggaagaagagcgtaccaag 36882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 34467009 - 34467246
Alignment:
Q  6 gatggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtg 105  Q
    |||||||||||| ||||| || || ||  ||||||||||||||||||||||||| ||  ||||||||||||||||  | ||| | ||||| ||||| |||    
T  34467009 gatggacatccaagcatcctacagctgtttactaggccgaccctggattcatgaagcgggggcagtaacgtctaccttgcatcagaagttaaagtttgtg 34467108  T
Q  106 aggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttcctcgcggctgatagggtttaagggacgc 205  Q
    | |||||||||||| ||||||||||||||||| |||||||| || || |||||||||||||||||||||||| | | ||| ||||| ||| |||||||||    
T  34467109 aagaatgggaagctagtaactgtgaatggtgaagaggctttgttagtaagccatttgtcgtctttctctttcattggggccgatagtgttgaagggacgc 34467208  T
Q  206 cttttttgggatttgccatcgaagaagagaataccaag 243  Q
    |||||  |||||||  ||| |||||||||| |||||||    
T  34467209 cttttcagggatttatcatggaagaagagagtaccaag 34467246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 36377721 - 36377551
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || ||||||||||| || |||||  |||| || || || || || ||| ||||||||||||| ||||    
T  36377721 atggacattcaagcttcgtatagttgcctactgggtcgaccctggatccacgaggcaggggctgtcacatccacgctgcatcaaaagttgaagtttgtga 36377622  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  36377621 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 36377551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 37002375 - 37002205
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || ||||||||||| || |||||  |||| || || || || || ||| ||||||||||||| ||||    
T  37002375 atggacattcaagcttcgtatagttgcctactgggtcgaccctggatccacgaggcaggggctgtcacatccacgctgcatcaaaagttgaagtttgtga 37002276  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  37002275 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 37002205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 177
Target Start/End: Complemental strand, 5441958 - 5441806
Alignment:
Q  25 tatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtgaggaatgggaagctggtaa 124  Q
    |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| |||| |||||||||||| ||||    
T  5441958 tatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtgaagaatgggaagctagtaa 5441859  T
Q  125 ctgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
    |||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  5441858 ctgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 5441806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 11946169 - 11945999
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  11946169 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 11946070  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||| ||||||    
T  11946069 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttttctttc 11945999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 17955499 - 17955669
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| || |    
T  17955499 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtaa 17955598  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| || |||||||||    
T  17955599 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatccttctctttc 17955669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 31518704 - 31518874
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || |||||||||||| |||| || |||||||||||||| |||||  | || || || || || || ||| ||||| ||||||| || |    
T  31518704 atggacattcaagcttcatatagttgcttactgggtcgaccctggattcacgaggcaggagctgtcacatccacgctgcatcaaaagctgaagtttgtaa 31518803  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  31518804 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 31518874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 15786478 - 15786308
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || |||||||||||| |||| || |||||||||||||| || ||  | || || || || || || ||| ||||| ||||||| || |    
T  15786478 atggacattcaagcttcatatagttgcttactgggtcgaccctggattcacgaagcaggagctgtcacatccacgctgcatcaaaagctgaagtttgtaa 15786379  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  15786378 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 15786308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 27576 - 27746
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  27576 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 27675  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  27676 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 27746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 304319 - 304489
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || ||||||||||||||||||||  |||| ||||| || ||||| ||| ||||| ||||||| ||||    
T  304319 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcatgaggcaggggctgtaacatccacactgcatcaaaagctgaagtttgtga 304418  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || || || ||||| ||||| ||||| |||||||| ||||||||||||    
T  304419 agaatgggaagctagtaactgtaaacggagaagaggcattattagtgagtcatttgtcatctttctctttc 304489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 9138162 - 9137992
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  9138162 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 9138063  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  9138062 agaatgggaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 9137992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 177
Target Start/End: Complemental strand, 5630854 - 5630684
Alignment:
Q  7 atggacatccaggcatcatatagttgcctactaggccgaccctggattcatgaggctagggcagtaacgtctacactacattaaaagttgaagttcgtga 106  Q
    |||||||| || || || |||||||||||||| || |||||||||||||| |||||  |||| || || || || || ||| ||||| ||||||| ||||    
T  5630854 atggacattcaagcttcgtatagttgcctactgggtcgaccctggattcacgaggcaggggctgtcacatccacgctgcatcaaaagctgaagtttgtga 5630755  T
Q  107 ggaatgggaagctggtaactgtgaatggtgatgaggctttattggtgagccatttgtcgtctttctctttc 177  Q
     |||||| ||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  5630754 agaatggaaagctagtaactgtaaacggtgaagaggctttattggtgagtcatttgtcatctttctctttc 5630684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University