View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_41 (Length: 441)

Name: NF11737A_low_41
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_41
NF11737A_low_41
[»] chr6 (3 HSPs)
chr6 (15-114)||(24491771-24491871)
chr6 (15-106)||(24495329-24495421)
chr6 (15-59)||(2810327-2810371)
[»] chr3 (1 HSPs)
chr3 (15-106)||(24359084-24359176)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-106)||(86830-86921)
[»] chr5 (1 HSPs)
chr5 (15-106)||(18556573-18556664)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 24491771 - 24491871
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagc-aaaaatcattattccttacatatcattattccttatatggtatc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24491771 ggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatatggtatc 24491870  T
Q  114 a 114  Q
    |    
T  24491871 a 24491871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 24495329 - 24495421
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagc-aaaaatcattattccttacatatcattattccttata 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24495329 ggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata 24495421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 2810327 - 2810371
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtga 59  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  2810327 ggacaacaaatatgtttctatatattgtaccaatataccttgtga 2810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 24359084 - 24359176
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagc-aaaaatcattattccttacatatcattattccttata 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24359084 ggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata 24359176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 86830 - 86921
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaatcattattccttacatatcattattccttata 106  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  86830 ggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagcaaaaatcattattccttatatatcattattccttata 86921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 18556664 - 18556573
Alignment:
Q  15 ggacatcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaatcattattccttacatatcattattccttata 106  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18556664 ggacagcaaatatgtttctatatattgtaccaatataccttgtgaatgatatagcaaaaatcattattccatacatatcattattccttata 18556573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University