View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_411 (Length: 243)
Name: NF11737A_low_411
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_411 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 5134533 - 5134740
Alignment:
| Q |
12 |
cactataaggtataaccctaatcacctgaaaagaaacactaaaacaaataaaaa-gactactcaacattataaggagatatacacacaaaaatgcctagt |
110 |
Q |
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| T |
5134533 |
cactataaggtataaccctaatcacctgaaaagaaacactaaaacaaataaaaaagactactcaacattataagaagatatacacgcaaaaat------- |
5134625 |
T |
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| Q |
111 |
gatactaacttgtggtaggttacccttccagtaacctctaatgccttcttccttccctatcattgatatggcctgcaaatctt-tcaatgtaagctccaa |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5134626 |
---actaacctgtggtaggttacccttccagtaacctctaatgccttcttccttccctatcattgatatggcctgcaaatcttgtcaatgtaagctccaa |
5134722 |
T |
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| Q |
210 |
taaatttataggtgatgt |
227 |
Q |
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||||||||||||| |||| |
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| T |
5134723 |
taaatttataggtaatgt |
5134740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 24998246 - 24998304
Alignment:
| Q |
127 |
aggttacccttccagtaacctctaatgccttcttccttccctatcattgatatggcctg |
185 |
Q |
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||||| |||||||||||||||||||| ||||||||||| ||||| | || ||||||||| |
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| T |
24998246 |
aggtttcccttccagtaacctctaatcccttcttcctttcctataactgttatggcctg |
24998304 |
T |
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