View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_418 (Length: 242)
Name: NF11737A_low_418
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_418 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 37552214 - 37552392
Alignment:
| Q |
18 |
acatcagccttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgt |
117 |
Q |
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| T |
37552214 |
acatcagccttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgt |
37552313 |
T |
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| Q |
118 |
gattcagaaaatggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattca |
196 |
Q |
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| T |
37552314 |
gattcagaaaatggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattca |
37552392 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 39363329 - 39363433
Alignment:
| Q |
18 |
acatcagccttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgt |
117 |
Q |
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| T |
39363329 |
acatcaacattccgattttgaacaaagagtagtatgtacagatgcacatgtacatgagtggaacaaaagcaaatgcctgtacaagaaattgaaggtaagt |
39363428 |
T |
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| Q |
118 |
gattc |
122 |
Q |
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| T |
39363429 |
gattc |
39363433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 36162942 - 36162893
Alignment:
| Q |
193 |
ttcaccttaaggagatacagctgggtcaaactcaagttgacacatgatag |
242 |
Q |
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| T |
36162942 |
ttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatag |
36162893 |
T |
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