View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_421 (Length: 242)
Name: NF11737A_low_421
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_421 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39427127 - 39426900
Alignment:
| Q |
1 |
tggagaaatttgattaccaaacgaggtagcttgaatctgaaaagaagcatttcgatagccagatgaaggagatggaatcaagagagaggcaattagaagg |
100 |
Q |
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| T |
39427127 |
tggagaaatttgattaccaaacgagggagcttgaatctgaaaagaagcattttgatagccagatgaaggagatggaatcaagagagaggcaatttgaagg |
39427028 |
T |
|
| Q |
101 |
acggtcgaagcagctagagtttaaagaggagcaactgaaagtccgaatggaggagtctcattcaaaagaggaacaattcaaaggccaagtgaaggacctt |
200 |
Q |
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| T |
39427027 |
acggtcgaagcagctagagtttaaagaggagcaactgaaagtccgaatggaggagtctcattcaaaagaggaacaattcaaaggccaagtgaaggacctt |
39426928 |
T |
|
| Q |
201 |
cagtcaaaagaaaacgaacttgatgtcc |
228 |
Q |
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| T |
39426927 |
cagtcaaaagaaaacgaacttgatgtcc |
39426900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 39130161 - 39130361
Alignment:
| Q |
28 |
agcttgaatctgaaaagaagcatttcgatagccagatgaaggagatggaatcaagagagaggcaattagaaggacggtcgaagcagctagagtttaaaga |
127 |
Q |
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| T |
39130161 |
agcttgaatctgaaaagaagcatttcagtagccgagtgaaggggcaggaattaaaagagaggcaatatgaaggacgagcgaagatgctagagttaaaaga |
39130260 |
T |
|
| Q |
128 |
ggagcaactgaaagtccgaatggaggagtctcattcaaaagaggaacaattcaaaggccaagtgaaggaccttcagtcaaaagaaaacgaacttgatgtc |
227 |
Q |
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| T |
39130261 |
ggagcaactcaatgaccgagtgaaggagtttcattcaaaagaggagcaattcaaaggcctggtgaagggccttcagtcaaaagaaaaccaacttggtgtc |
39130360 |
T |
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| Q |
228 |
c |
228 |
Q |
| |
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| |
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| T |
39130361 |
c |
39130361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 39494937 - 39494736
Alignment:
| Q |
28 |
agcttgaatctgaaaagaagcatttcgatagccagatgaaggagatggaatcaagagagaggcaattagaaggacggtcgaagcagctagagtttaaaga |
127 |
Q |
| |
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||||||||| ||||||| ||||||| ||||||| | ||||||| ||||||||| || |||||| | ||| |||| ||| ||||||| ||| ||||| |
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| T |
39494937 |
agcttgaatatgaaaagcagcattttgatagccgggtgaaggaattggaatcaaatgaaaggcaacttgaaagacgagcgagacagctagtgttgaaaga |
39494838 |
T |
|
| Q |
128 |
ggagcaactgaaagtccgaatggaggagtctcattcaaaagaggaacaattcaaaggccaagtgaaggaccttcagtcaaaagaaaacgaacttgatgtc |
227 |
Q |
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| T |
39494837 |
ggagcaactcaaaggtctagtgaaagagtttgattcaaaagaggagcaattcaaagaccaagtgaaggaccttaagtcaaaacaaaaccaacttgatgtc |
39494738 |
T |
|
| Q |
228 |
ca |
229 |
Q |
| |
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|| |
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| T |
39494737 |
ca |
39494736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 39143289 - 39143418
Alignment:
| Q |
1 |
tggagaaatttgattaccaaacgaggtagcttgaatctgaaaagaagcatttcgatagccagatgaaggagatggaatcaagagagaggcaattagaagg |
100 |
Q |
| |
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||||||||||| ||| ||||||| | ||||||||||| |||||||| |||| ||||||| | |||||||| || | |||| |||||||||||| |||| |
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| T |
39143289 |
tggagaaatttcattggcaaacgaaggagcttgaatctaaaaagaagaattttgatagccgggtgaaggagctgaattcaaaagagaggcaatttaaagg |
39143388 |
T |
|
| Q |
101 |
acggtcgaagcagctagagtttaaagagga |
130 |
Q |
| |
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| || ||||||| ||||||| |||||||| |
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| T |
39143389 |
atgggtgaagcagttagagttaaaagagga |
39143418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 39143410 - 39143442
Alignment:
| Q |
164 |
aaaagaggaacaattcaaaggccaagtgaagga |
196 |
Q |
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| T |
39143410 |
aaaagaggaacaattcaaaggccaagtgaagga |
39143442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 39124202 - 39124272
Alignment:
| Q |
30 |
cttgaatctgaaaagaagcatttcgatagccagatgaaggagatggaatcaagagagaggcaattagaagg |
100 |
Q |
| |
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||||| ||||||||||||||| ||||||||| ||||||||| || || || ||||| |||||||||||| |
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| T |
39124202 |
cttgattctgaaaagaagcatgtcgatagccgaatgaaggagctgaaactaaaagagatgcaattagaagg |
39124272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 39124284 - 39124397
Alignment:
| Q |
83 |
agagaggcaattagaaggacggtcgaagcagctagagtttaaagaggagcaactgaaagtccgaatggaggagtctcattcaaaagaggaacaattcaaa |
182 |
Q |
| |
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||||| |||||||||||||||| |||| || ||||| | || ||||||||||| ||| |||| | |||||| | ||||| || |||| |||||||| |
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| T |
39124284 |
agagatgcaattagaaggacgggtgaaggagatagaggtaaacgaggagcaactcaaatgccgattaaaggagtttgattcagaaaaggagaaattcaaa |
39124383 |
T |
|
| Q |
183 |
ggccaagtgaagga |
196 |
Q |
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||||||||||||| |
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| T |
39124384 |
agccaagtgaagga |
39124397 |
T |
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