View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_422 (Length: 242)
Name: NF11737A_low_422
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_422 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 8293848 - 8293626
Alignment:
| Q |
20 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
119 |
Q |
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| T |
8293848 |
ataaaaacaacagaaacgtgtacattgcagaaactgataatcaatttaatcgtcacgagagaaaacaatactaacctaactattaacatactaatattct |
8293749 |
T |
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| Q |
120 |
acatttgttattnnnnnnntagcgcctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
219 |
Q |
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| T |
8293748 |
acatttgttattaaaaaaatagcacctaaaccagagatgcaattaattatatggagatcaaatgcacatgacacggacgctatacaaaacgcagcaacaa |
8293649 |
T |
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| Q |
220 |
aatatctggaatcagagaaatta |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
8293648 |
aatatctggaatcagagaaatta |
8293626 |
T |
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