View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_425 (Length: 242)

Name: NF11737A_low_425
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_425
NF11737A_low_425
[»] chr3 (11 HSPs)
chr3 (11-231)||(3472913-3473132)
chr3 (14-231)||(18539221-18539439)
chr3 (99-231)||(3586037-3586169)
chr3 (14-145)||(39728849-39728979)
chr3 (11-142)||(18694761-18694891)
chr3 (11-142)||(18710280-18710410)
chr3 (137-231)||(39728207-39728300)
chr3 (105-190)||(15778350-15778435)
chr3 (16-116)||(19595713-19595813)
chr3 (62-142)||(3289496-3289575)
chr3 (186-228)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (11-231)||(561-781)
[»] chr4 (13 HSPs)
chr4 (14-231)||(11150311-11150527)
chr4 (16-228)||(25127291-25127503)
chr4 (11-231)||(15703423-15703642)
chr4 (14-231)||(23972830-23973047)
chr4 (14-231)||(14644608-14644824)
chr4 (11-230)||(4529772-4529989)
chr4 (103-228)||(19612930-19613056)
chr4 (15-142)||(18875038-18875161)
chr4 (91-148)||(20770653-20770710)
chr4 (126-219)||(12385288-12385382)
chr4 (192-229)||(9565036-9565073)
chr4 (102-142)||(15691335-15691376)
chr4 (98-142)||(9609818-9609862)
[»] chr7 (12 HSPs)
chr7 (14-231)||(11509747-11509963)
chr7 (14-231)||(18148735-18148951)
chr7 (14-228)||(22530124-22530338)
chr7 (14-231)||(34705766-34705977)
chr7 (11-190)||(21860584-21860761)
chr7 (30-135)||(13694170-13694274)
chr7 (84-179)||(3377724-3377820)
chr7 (114-190)||(21501014-21501091)
chr7 (117-173)||(6019275-6019331)
chr7 (120-168)||(13386703-13386750)
chr7 (120-168)||(19193977-19194024)
chr7 (122-173)||(21498551-21498603)
[»] chr1 (10 HSPs)
chr1 (14-229)||(52272638-52272852)
chr1 (58-229)||(12785022-12785199)
chr1 (103-229)||(41138001-41138127)
chr1 (103-228)||(23633272-23633398)
chr1 (103-231)||(9132518-9132647)
chr1 (31-142)||(89878-89988)
chr1 (11-108)||(18514938-18515036)
chr1 (58-142)||(18249887-18249972)
chr1 (107-158)||(19474425-19474476)
chr1 (11-50)||(18249965-18250004)
[»] chr8 (7 HSPs)
chr8 (14-231)||(9882232-9882449)
chr8 (14-229)||(40387498-40387712)
chr8 (108-231)||(1216744-1216867)
chr8 (59-231)||(42145381-42145553)
chr8 (103-142)||(17289632-17289671)
chr8 (14-68)||(4860588-4860638)
chr8 (11-91)||(42145299-42145378)
[»] chr5 (6 HSPs)
chr5 (13-231)||(39437069-39437286)
chr5 (106-179)||(29497057-29497130)
chr5 (120-168)||(27273153-27273200)
chr5 (120-167)||(19049409-19049455)
chr5 (103-134)||(32039818-32039849)
chr5 (194-231)||(29497018-29497055)
[»] chr6 (9 HSPs)
chr6 (58-231)||(19770140-19770312)
chr6 (14-231)||(19891695-19891909)
chr6 (14-224)||(9547622-9547831)
chr6 (97-231)||(22468810-22468951)
chr6 (121-190)||(12876106-12876176)
chr6 (103-142)||(19565277-19565316)
chr6 (103-142)||(20738946-20738985)
chr6 (11-65)||(22468752-22468806)
chr6 (119-156)||(17729507-17729544)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-227)||(106674-106885)
[»] scaffold0005 (1 HSPs)
scaffold0005 (14-231)||(172468-172684)
[»] scaffold0323 (1 HSPs)
scaffold0323 (96-228)||(15300-15432)
[»] chr2 (12 HSPs)
chr2 (103-229)||(20264687-20264813)
chr2 (103-231)||(16092412-16092541)
chr2 (11-142)||(32625541-32625671)
chr2 (19-133)||(34892182-34892295)
chr2 (103-190)||(38991701-38991788)
chr2 (115-229)||(27401699-27401814)
chr2 (58-135)||(20178635-20178711)
chr2 (103-190)||(22385814-22385899)
chr2 (114-171)||(30613270-30613327)
chr2 (113-156)||(29890519-29890563)
chr2 (11-81)||(16092227-16092297)
chr2 (98-173)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (14-142)||(12012-12139)
scaffold0498 (138-228)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (148-223)||(353-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-142)||(221835-221894)
[»] scaffold0043 (2 HSPs)
scaffold0043 (103-175)||(66678-66752)
scaffold0043 (13-81)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (114-142)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 3473132 - 3472913
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  111 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 210  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  211 accatgaatgcatgaacacca 231  Q
    |||||||||||||||||||||    
T  3472933 accatgaatgcatgaacacca 3472913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 18539439 - 18539221
Alignment:
Q  14 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 112  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  113 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactga 211  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  212 ccatgaatgcatgaacacca 231  Q
     |||||||||||||||||||    
T  18539240 acatgaatgcatgaacacca 18539221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 3586037 - 3586169
Alignment:
Q  99 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctt 198  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  199 taaatcggactgaccatgaatgcatgaacacca 231  Q
    |||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacacca 3586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  114 ctaactcgactctatatgcatgtggtaccggt 145  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  111 tccctaactcgactctatatgcatgtggtacc 142  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  111 tccctaactcgactctatatgcatgtggtacc 142  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 39728300 - 39728207
Alignment:
Q  137 ggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 231  Q
    |||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 39728207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  105 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  16 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 115  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  116 a 116  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  62 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  186 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 228  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 561 - 781
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  111 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggact 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  210 gaccatgaatgcatgaacacca 231  Q
    ||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacacca 781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 11150311 - 11150527
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  214 atgaatgcatgaacacca 231  Q
    ||||||||||||||||||    
T  11150510 atgaatgcatgaacacca 11150527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  16 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 115  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  116 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacca 214  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  215 tgaatgcatgaaca 228  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 15703423 - 15703642
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  111 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 210  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  211 accatgaatgcatgaacacca 231  Q
    |||||||||||||||||||||    
T  15703622 accatgaatgcatgaacacca 15703642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 23972830 - 23973047
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  213 catgaatgcatgaacacca 231  Q
    |||||||||||||||||||    
T  23973029 catgaatgcatgaacacca 23973047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 14644608 - 14644824
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  214 atgaatgcatgaacacca 231  Q
    ||||||||||||||||||    
T  14644807 atgaatgcatgaacacca 14644824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  111 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 210  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  211 accatgaatgcatgaacacc 230  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 201  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  202 atcggactgaccatgaatgcatgaaca 228  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  15 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 114  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  115 taactcgactctatatgcatgtggtacc 142  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  91 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 148  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  126 tatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 219  Q
    |||||||||||||||    |||||||| || || | ||||||| || |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  192 acatctttaaatcggactgaccatgaatgcatgaacac 229  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  102 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 142  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  98 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 11509963 - 11509747
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  214 atgaatgcatgaacacca 231  Q
    ||||||||||||||||||    
T  11509764 atgaatgcatgaacacca 11509747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 18148951 - 18148735
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  214 atgaatgcatgaacacca 231  Q
    ||||||||||||||||||    
T  18148752 atgaatgcatgaacacca 18148735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  213 catgaatgcatgaaca 228  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  213 catgaatgcatgaacacca 231  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 110  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  111 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  30 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 129  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  130 tgcatg 135  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 3377724 - 3377820
Alignment:
Q  84 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatcagaattatgttactgatttatccc 179  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| | |||| ||| ||||| |||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatcatagttatattattgattaatccc 3377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  114 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || ||||||||| |||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  117 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatt 173  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||| ||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 13386703 - 13386750
Alignment:
Q  120 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 168  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttac 13386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 19194024 - 19193977
Alignment:
Q  120 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 168  Q
    |||||||||| ||||||||||||  |||||||||||||| |||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttac 19193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 21498551 - 21498603
Alignment:
Q  122 actctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 173  Q
    |||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||    
T  21498551 actctatatgcacgtggtaccaggttttagatgtcagagttatgttactgatt 21498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  214 atgaatgcatgaacac 229  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  58 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 157  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  158 aa-------ttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 229  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 202  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  203 tcggactgaccatgaatgcatgaacac 229  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 23633398 - 23633272
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  202 atcggactgaccatgaatgcatgaaca 228  Q
    |||||||||||||||||| ||||||||    
T  23633298 atcggactgaccatgaattcatgaaca 23633272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 9132647 - 9132518
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  202 atcggactgaccatgaatgcatgaacacca 231  Q
    |||||||| || ||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacacca 9132518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  31 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 130  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  131 gcatgtggtacc 142  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 108  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  58 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  107 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 158  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatctt 50  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 9882232 - 9882449
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  213 catgaatgcatgaacacca 231  Q
    |||||||||||||||||||    
T  9882431 catgaatgcatgaacacca 9882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 40387498 - 40387712
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| |||||||||      
T  40387498 tcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgttt 40387596  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||    
T  40387597 ctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaatcggacttac 40387695  T
Q  213 catgaatgcatgaacac 229  Q
    |||||||||||||||||    
T  40387696 catgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 1216744 - 1216867
Alignment:
Q  108 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcgga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  208 ctgaccatgaatgcatgaacacca 231  Q
    || |||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacacca 1216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 42145381 - 42145553
Alignment:
Q  59 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 158  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  159 attatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacacca 231  Q
      ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacacca 42145553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 68  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 91  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 39437286 - 39437069
Alignment:
Q  13 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 112  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  113 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgac 212  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  213 catgaatgcatgaacacca 231  Q
    |||||||||||||||||||    
T  39437087 catgaatgcatgaacacca 39437069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  106 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatccc 179  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 27273153 - 27273200
Alignment:
Q  120 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 168  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttac 27273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  120 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 167  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcat 134  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 29497055 - 29497018
Alignment:
Q  194 atctttaaatcggactgaccatgaatgcatgaacacca 231  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacacca 29497018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 19770312 - 19770140
Alignment:
Q  58 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 157  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  158 aattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 231  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 19770140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 19891695 - 19891909
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  214 atgaatgcatgaacacca 231  Q
    | ||||||||||||||||    
T  19891892 acgaatgcatgaacacca 19891909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 9547622 - 9547831
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 212  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  213 catgaatgcatg 224  Q
    |||| |||||||    
T  9547820 catgcatgcatg 9547831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 22468810 - 22468951
Alignment:
Q  97 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa------ 190  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||||||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  191 --cacatctttaaatcggactgaccatgaatgcatgaacacca 231  Q
       |||||||||||||||| |||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacacca 22468951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  121 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    ||||||||||| ||||||||||  ||||||||| ||||| ||||||||| || | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 65  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  119 tcgactctatatgcatgtggtaccggttttggatatca 156  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  15 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 114  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  115 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  214 atgaatgcatgaac 227  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 172684 - 172468
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 213  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  214 atgaatgcatgaacacca 231  Q
    ||||||||||||||||||    
T  172485 atgaatgcatgaacacca 172468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 15300 - 15432
Alignment:
Q  96 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacat 195  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  196 ctttaaatcggactgaccatgaatgcatgaaca 228  Q
    |||||||||||||||||||||||||||||||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaaca 15432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 202  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  203 tcggactgaccatgaatgcatgaacac 229  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 16092412 - 16092541
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 201  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  202 atcggactgaccatgaatgcatgaacacca 231  Q
    |||||||||| |||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacacca 16092541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 109  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  110 gtccctaactcgactctatatgcatgtggtacc 142  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  19 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 118  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  119 tcgactctatatgca 133  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  115 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 213  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  214 atgaatgcatgaacac 229  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  58 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 135  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  103 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 190  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 30613327 - 30613270
Alignment:
Q  114 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactga 171  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||  |||||| ||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctga 30613270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  113 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 156  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  11 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 81  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 19467160 - 19467084
Alignment:
Q  98 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 173  Q
    |||| ||||||||| |||||||| ||| || ||||||||||||||   ||||||||||||||  |||| ||||||||    
T  19467160 tatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatggtactgatt 19467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 142
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  14 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 113  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  114 ctaactcgactctatatgcatgtggtacc 142  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  138 gtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 228  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 429 - 353
Alignment:
Q  148 tggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcat 223  Q
    ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||||||||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcat 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  83 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 142  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 66752 - 66678
Alignment:
Q  103 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcagaattatgttactgattta 175  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||  ||||||  |||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcagaggtatgttgttgattta 66678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  13 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 81  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  114 ctaactcgactctatatgcatgtggtacc 142  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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