View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_427 (Length: 242)

Name: NF11737A_low_427
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_427
NF11737A_low_427
[»] chr8 (1 HSPs)
chr8 (1-223)||(36241051-36241272)
[»] chr5 (5 HSPs)
chr5 (23-223)||(33215070-33215268)
chr5 (23-219)||(18691034-18691230)
chr5 (23-219)||(41108975-41109171)
chr5 (23-123)||(41109727-41109827)
chr5 (154-207)||(22726480-22726534)
[»] chr3 (6 HSPs)
chr3 (23-223)||(25184725-25184925)
chr3 (28-195)||(35390487-35390660)
chr3 (139-223)||(55380329-55380413)
chr3 (152-185)||(42428432-42428465)
chr3 (26-70)||(24864854-24864898)
chr3 (153-185)||(9678749-9678781)
[»] chr7 (5 HSPs)
chr7 (26-223)||(17165852-17166052)
chr7 (23-177)||(41483079-41483239)
chr7 (23-106)||(7975991-7976074)
chr7 (23-65)||(18963145-18963187)
chr7 (153-189)||(29250494-29250530)
[»] chr1 (6 HSPs)
chr1 (26-223)||(5721846-5722042)
chr1 (23-219)||(11359325-11359521)
chr1 (152-185)||(52975691-52975724)
chr1 (153-189)||(1280528-1280564)
chr1 (153-186)||(49105523-49105556)
chr1 (153-185)||(17508545-17508577)
[»] chr4 (7 HSPs)
chr4 (23-223)||(25542284-25542490)
chr4 (123-223)||(11840869-11840969)
chr4 (153-223)||(35612-35682)
chr4 (152-186)||(48879618-48879652)
chr4 (153-190)||(40868891-40868928)
chr4 (156-192)||(40578895-40578931)
chr4 (157-185)||(45019069-45019097)
[»] chr2 (4 HSPs)
chr2 (21-223)||(39814526-39814727)
chr2 (33-215)||(12987338-12987526)
chr2 (142-190)||(25059704-25059752)
chr2 (142-190)||(25064503-25064551)
[»] chr6 (5 HSPs)
chr6 (152-223)||(10857323-10857394)
chr6 (123-218)||(832031-832126)
chr6 (23-106)||(832201-832284)
chr6 (142-190)||(23112484-23112532)
chr6 (142-190)||(23117282-23117330)
[»] scaffold0245 (1 HSPs)
scaffold0245 (153-189)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (153-189)||(6536-6572)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36241051 - 36241272
Alignment:
Q  1 taggcataaatagtaatgaaattgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataag 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36241051 taggcataaatagtaatgaaattgttagatactggttcaaatgtgaataaataccaatgataattctatggtatttgggagat-attgcataataataag 36241149  T
Q  101 ggaatgatgaattattattgatacaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacataca 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36241150 ggaatgatgtattattattgatacaggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacataca 36241249  T
Q  201 aaatacccaatgccctccctttt 223  Q
    |||||||||||||||||||||||    
T  36241250 aaatacccaatgccctccctttt 36241272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 33215070 - 33215268
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  33215070 tgttagatactggttcagatgtgaataaataccgatgataattcaatggtatttgggagattattgcataataataagggaatgatg--ttattattgat 33215167  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttt 222  Q
    ||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33215168 acatgaaagtaactgcagaaaagtaaccaacctctagaaattagagagcctagtctctcccaaaccaacccacatacaaattacccaatgccctcccttt 33215267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 18691230 - 18691034
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  18691230 tgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgat 18691131  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 219  Q
    | | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18691130 ataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttccc 18691034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 41109171 - 41108975
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  41109171 tgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgat 41109072  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 219  Q
    | | |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  41109071 ataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcccagtctctcccaaaccaacccacatacaaaatacccaatgccttccc 41108975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 41109827 - 41109727
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  41109827 tgttagattctggttcagatgtgaataaataccgatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgat 41109728  T
Q  123 a 123  Q
    |    
T  41109727 a 41109727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 22726534 - 22726480
Alignment:
Q  154 ctctaggaattagagagcctagtctctcccaaacc-aacccacatacaaaatacc 207  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||    
T  22726534 ctctaggaattagagagcctagtctctcccaaaccaaaccaacatacgaaatacc 22726480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 25184925 - 25184725
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    |||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||    
T  25184925 tgttggatactggttcagatgtgaataaatatcactgataaatctatggtatttgggagattattgcataataataagcgaatgatgttttattattgat 25184826  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttt 222  Q
    | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25184825 ataggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttt 25184726  T
Q  223 t 223  Q
    |    
T  25184725 t 25184725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 35390660 - 35390487
Alignment:
Q  28 gatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatg------atgaattattattga 121  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||      ||| |||||||||||    
T  35390660 gatactggttcagatatctataaataccaatgataattctatggtatttggtagattattgtaaaataataaggaaatgcatgtgatgtattattattga 35390561  T
Q  122 tacaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccac 195  Q
    |||| | |||||| |||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  35390560 tacatgtaagtaactgcagaaaggtaaccaacctttaggagttagagagcctagtctctcccaaaccaacccac 35390487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 55380329 - 55380413
Alignment:
Q  139 agaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 223  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||| ||||    
T  55380329 agaaaactaacaaacctctaggaattagagagcctagtctctcccaaaccaaccaacatataaaataactaatgccctccttttt 55380413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 42428465 - 42428432
Alignment:
Q  152 acctctaggaattagagagcctagtctctcccaa 185  Q
    ||||||||||||||||||||||||||||||||||    
T  42428465 acctctaggaattagagagcctagtctctcccaa 42428432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 24864898 - 24864854
Alignment:
Q  26 tagatactggttcagatgtgaataaataccaatgataattctatg 70  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||    
T  24864898 tagatactggttcagatatgaataaacaccaatggtaattctatg 24864854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 9678781 - 9678749
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaa 185  Q
    ||||||||||| |||||||||||||||||||||    
T  9678781 cctctaggaatcagagagcctagtctctcccaa 9678749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 17165852 - 17166052
Alignment:
Q  26 tagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat--- 122  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||       
T  17165852 tagatactggttcagatgtgaataaatatcgatgataattctatggtatttgggagattattgcataataataagggaatgatatattattattgatcat 17165951  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttt 222  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17165952 acaggaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaactacccaatgccctcccttt 17166051  T
Q  223 t 223  Q
    |    
T  17166052 t 17166052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 41483239 - 41483079
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaa------tgatgaattatt 116  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||| ||||||    
T  41483239 tgttatatactggttcagatatgtataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgcacgtgatgtattatt 41483140  T
Q  117 attgatacaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtc 177  Q
    ||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  41483139 attcatacaggaaagtaactgcagaaaagtaacctacctctaggaattagagagcctagtc 41483079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 7976074 - 7975991
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatg 106  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||   ||| |||||||||||||||| |||||| | ||||||    
T  7976074 tgttagataccggttcagatatgaataaataccaatgataattcttcagtacttgggagattattgcaaaataatcaaggaatg 7975991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 18963145 - 18963187
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataatt 65  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  18963145 tgttagatactggttcagatgtgaagaaataccgatgataatt 18963187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 29250530 - 29250494
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaacca 189  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29250530 cctctaggaatcagagagcctagtctctcccaaacca 29250494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 5722042 - 5721846
Alignment:
Q  26 tagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgataca 125  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |    
T  5722042 tagattctggttcagatgtgaataaataccgatgataattctatggtatttgggagattattgcataataataaaggaatgatctattattattgatata 5721943  T
Q  126 ggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 223  Q
     |||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5721942 agaaagtaactgcagaaaagt-accaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 5721846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 11359325 - 11359521
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattgat 122  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  11359325 tgttagattctggttcagatgtgaataaatacagatgataattctatggtatttggtagattattgcataataataaaggaatgatctattattattgat 11359424  T
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccc 219  Q
    | | |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11359425 ataagaaagtaactgcagaaaagtaaccaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccttccc 11359521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 52975691 - 52975724
Alignment:
Q  152 acctctaggaattagagagcctagtctctcccaa 185  Q
    ||||||||||||||||||||||||||||||||||    
T  52975691 acctctaggaattagagagcctagtctctcccaa 52975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 1280564 - 1280528
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaacca 189  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1280564 cctctaggaatcagagagcctagtctctcccaaacca 1280528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 49105556 - 49105523
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaa 186  Q
    ||||||||||| ||||||||||||||||||||||    
T  49105556 cctctaggaatcagagagcctagtctctcccaaa 49105523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 17508577 - 17508545
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaa 185  Q
    ||||||||||||||||||||| |||||||||||    
T  17508577 cctctaggaattagagagccttgtctctcccaa 17508545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 25542284 - 25542490
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataat------tctatggtatttgggagattattgcataataataagggaatgatgaattatt 116  Q
    |||||||||| |||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25542284 tgttagataccggttcagatgtgaataaataccgatgataattctaattctatggtatttgggagattattgcataataataagggaatgatgtattatt 25542383  T
Q  117 attgatacaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccct 216  Q
    |||||||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  25542384 attgatacaggaaagtaactgcataaaagtaaccaacctctagcaattagagagcctagtccctcccaaaccaacccacataaaaaatacccaatgccct 25542483  T
Q  217 ccctttt 223  Q
    |||||||    
T  25542484 ccctttt 25542490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 11840969 - 11840869
Alignment:
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcccttt 222  Q
    |||||||| ||| |||| |||| ||||  |||||||||||||||||| |||||||||||||||||||| | | |||||||||||||| ||||||||||||    
T  11840969 acaggaaaataactgcataaaattaacaaacctctaggaattagagaacctagtctctcccaaaccaaactatatacaaaatacccagtgccctcccttt 11840870  T
Q  223 t 223  Q
    |    
T  11840869 t 11840869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 35612 - 35682
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 223  Q
    |||||||||||||||| |  |||||| ||||||||||||| || ||||||||||| || || |||||||||    
T  35612 cctctaggaattagagggtgtagtctatcccaaaccaaccaacgtacaaaatacctaaagctctccctttt 35682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 48879618 - 48879652
Alignment:
Q  152 acctctaggaattagagagcctagtctctcccaaa 186  Q
    |||||||||| ||||||||||||||||||||||||    
T  48879618 acctctaggacttagagagcctagtctctcccaaa 48879652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 40868928 - 40868891
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaaccaa 190  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  40868928 cctctaggaattagagagcctattctctctcaaaccaa 40868891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 40578895 - 40578931
Alignment:
Q  156 ctaggaattagagagcctagtctctcccaaaccaacc 192  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  40578895 ctaggaattagagagcttagtctctcccaacccaacc 40578931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 45019069 - 45019097
Alignment:
Q  157 taggaattagagagcctagtctctcccaa 185  Q
    |||||||||||||||||||||||||||||    
T  45019069 taggaattagagagcctagtctctcccaa 45019097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 39814727 - 39814526
Alignment:
Q  21 attgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatgatgaattattattg 120  Q
    |||| ||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  39814727 attgatagattctggttcagatgtgaataaatgcagatgataattctatggtatttgggagattattgcataataataaaggaatgatctattattattg 39814628  T
Q  121 atacaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccct 220  Q
    ||| | |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814627 atataagaaagtaactgcagaaaagt-accaacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccct 39814529  T
Q  221 ttt 223  Q
    |||    
T  39814528 ttt 39814526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 12987338 - 12987526
Alignment:
Q  33 tggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatg------atgaattattattgatacag 126  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      ||| ||||||||||||||||    
T  12987338 tggttcagatatgaataaataccaatgataattctatggtatttgggagattatagcataataataagggaatgcacgtgatgtattattattgatacag 12987437  T
Q  127 gaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccc 215  Q
    |||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12987438 gaaagtaactgcagaaaagtaatcaacctctaggaatcagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccc 12987526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 25059752 - 25059704
Alignment:
Q  142 aaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaa 190  Q
    ||||||| | |||||||||| |||||||||||||  |||||||||||||    
T  25059752 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 25059704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 25064551 - 25064503
Alignment:
Q  142 aaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaa 190  Q
    ||||||| | |||||||||| |||||||||||||  |||||||||||||    
T  25064551 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 25064503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 10857323 - 10857394
Alignment:
Q  152 acctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctccctttt 223  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10857323 acctctaggaattagagagcctagtctctcccaaaccaaccaacatacaaaatactcaatgccctccctttt 10857394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 832126 - 832031
Alignment:
Q  123 acaggaaagtaattgcagaaaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaacccacatacaaaatacccaatgccctcc 218  Q
    |||||||||||| |||| |||| ||||  |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||    
T  832126 acaggaaagtaactgcataaaactaacaaacctctaggaattatagagcctagtctctcccaaaccaaccaacatacaaaatactcattgccctcc 832031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 832284 - 832201
Alignment:
Q  23 tgttagatactggttcagatgtgaataaataccaatgataattctatggtatttgggagattattgcataataataagggaatg 106  Q
    ||||||||||||||||||||   | ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||    
T  832284 tgttagatactggttcagataatattaaataccaatgataattctatgatatttgggggattattggataataataagggaatg 832201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 23112532 - 23112484
Alignment:
Q  142 aaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaa 190  Q
    ||||||| | |||||||||| |||||||||||||  |||||||||||||    
T  23112532 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 23112484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 23117330 - 23117282
Alignment:
Q  142 aaagtaaccgacctctaggaattagagagcctagtctctcccaaaccaa 190  Q
    ||||||| | |||||||||| |||||||||||||  |||||||||||||    
T  23117330 aaagtaatcaacctctaggacttagagagcctagaatctcccaaaccaa 23117282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 6242 - 6206
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaacca 189  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6242 cctctaggaatcagagagcctagtctctcccaaacca 6206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 6572 - 6536
Alignment:
Q  153 cctctaggaattagagagcctagtctctcccaaacca 189  Q
    ||||||||||| |||||||||||||||||||||||||    
T  6572 cctctaggaatcagagagcctagtctctcccaaacca 6536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University