View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_428 (Length: 241)
Name: NF11737A_low_428
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_428 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 282059 - 281826
Alignment:
| Q |
6 |
aatgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
282059 |
aatgagattgacatcacagttacatccaaaatctcaagacattatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgtta |
281960 |
T |
|
| Q |
106 |
ttttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
205 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
281959 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgt |
281860 |
T |
|
| Q |
206 |
tgaagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
281859 |
tgaagcgtatatgatatcaccattgggacttacg |
281826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 49952974 - 49953205
Alignment:
| Q |
8 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
107 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| | |||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
49952974 |
tgagattgacataacagttacatccaaaatcttatgacattataagtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttatt |
49953073 |
T |
|
| Q |
108 |
ttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
207 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
49953074 |
ttaatccacacttgacacattaacatctctcaattaaatatgagactcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
49953173 |
T |
|
| Q |
208 |
aagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
49953174 |
aagcgtatatgatatcaccgttgggacttacg |
49953205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 39974981 - 39974750
Alignment:
| Q |
8 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
107 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
39974981 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttatt |
39974882 |
T |
|
| Q |
108 |
ttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
207 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
39974881 |
ttaacccacacttgacacattaccatctctcaattaaatacgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttg |
39974782 |
T |
|
| Q |
208 |
aagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
39974781 |
aagcgtatatgatatcaccattggaacttacg |
39974750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 13228787 - 13228607
Alignment:
| Q |
48 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaata |
147 |
Q |
| |
|
|||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||| |||||||||| |||||||||| ||||| || |
|
|
| T |
13228787 |
tatgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagta |
13228690 |
T |
|
| Q |
148 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattg |
230 |
Q |
| |
|
|||||| || ||||| |||||||||||||| | | ||||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
13228689 |
tgagactttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattg |
13228607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 21588784 - 21589015
Alignment:
| Q |
8 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
107 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21588784 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttatt |
21588883 |
T |
|
| Q |
108 |
ttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
207 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| || || ||||| |
|
|
| T |
21588884 |
ttaacccacccttgacacattaccatctctcaattaaatacgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttg |
21588983 |
T |
|
| Q |
208 |
aagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
21588984 |
aagcgtatatgatatcaccattggaacttacg |
21589015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 239
Target Start/End: Original strand, 42797278 - 42797466
Alignment:
| Q |
49 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatac |
148 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||| ||| | |||||||||||||||||||| ||| |||||||||| ||||||| || ||||| | |
|
|
| T |
42797278 |
atgagtcatctcacttatatgtttctcaacatatactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctttctattaagcat |
42797375 |
T |
|
| Q |
149 |
gagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
|||||||| || || || ||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
42797376 |
gagactctctgtatctgctatccaccaccacagaccacttccgctccccaaaaatgttgaagcagatatgatatcaccattgagacttacg |
42797466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 13756588 - 13756444
Alignment:
| Q |
93 |
attcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
192 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||| ||| ||||| | ||||||||| || || | |||||||||||| | ||||||||| |
|
|
| T |
13756588 |
attcaatgtgttattttaactcacacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttccgc |
13756489 |
T |
|
| Q |
193 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13756488 |
tccccaaaaatgttgaagcagatatgatatcaccattgggactta |
13756444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 23141830 - 23141974
Alignment:
| Q |
93 |
attcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
192 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | |||||||||| ||||| | |||||||| || || || |||||||||||| | ||||||||| |
|
|
| T |
23141830 |
attcaatgtgttattttaactcatacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttccgc |
23141929 |
T |
|
| Q |
193 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||| | ||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
23141930 |
tccccgaaaatgttgaagcagatatgatatcaccattgagactta |
23141974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 10901477 - 10901546
Alignment:
| Q |
93 |
attcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgt |
162 |
Q |
| |
|
|||||||||||||||||||| ||| |||| |||| |||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
10901477 |
attcaatgtgttattttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgt |
10901546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 36096247 - 36096016
Alignment:
| Q |
8 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
107 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||| |||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
36096247 |
tgagattgacatcgcagttacattcaaaatcttaagagattatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattatt |
36096148 |
T |
|
| Q |
108 |
ttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
207 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
36096147 |
ttaacccacacttgacacattacaatctctcaattaaatacgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttg |
36096048 |
T |
|
| Q |
208 |
aagcgtatatgatatcaccattgggacttacg |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
|
|
| T |
36096047 |
aagcgtatatgatatcaccattgggacatacg |
36096016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 12746101 - 12746174
Alignment:
| Q |
165 |
gcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttac |
238 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12746101 |
gcgatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattac |
12746174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 50331951 - 50332044
Alignment:
| Q |
49 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaa |
144 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||| |||||||||| |||||||||| ||||| |
|
|
| T |
50331951 |
atgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaa |
50332044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 50332065 - 50332105
Alignment:
| Q |
197 |
caaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
50332065 |
caaaaatgttgaagcagatatgatatcaccattgggactta |
50332105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 33013852 - 33013997
Alignment:
| Q |
8 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
107 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33013852 |
tgagattgacatcacaattacatccaagttcttaagacattatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttatt |
33013951 |
T |
|
| Q |
108 |
ttaacccacgcttgacacatcaacatctctcaattaaatacgagac |
153 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33013952 |
ttaacccacacttgacacattagcatctctcaattaaatacgagac |
33013997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 38015924 - 38016110
Alignment:
| Q |
48 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaata |
147 |
Q |
| |
|
|||||||||||||||| |||||||| |||| || || ||| | |||||||||||||||||||| ||| |||||||||| |||||||||| || || || |
|
|
| T |
38015924 |
tatgagtcatctcacttatatgttgctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagta |
38016021 |
T |
|
| Q |
148 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
|||||| || |||||| |||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
38016022 |
tgagactttt-gtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaagcggatatgatatcgccattgggactta |
38016110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 33014000 - 33014054
Alignment:
| Q |
184 |
cacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttac |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33014000 |
cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttac |
33014054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 1599776 - 1599590
Alignment:
| Q |
49 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatac |
148 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||| |||||||||| |||||||||| ||||| | |
|
|
| T |
1599776 |
atgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcat |
1599679 |
T |
|
| Q |
149 |
gagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
|||||||| || || || ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
1599678 |
gagactctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatgatatcacctttgggactta |
1599590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 26894952 - 26894811
Alignment:
| Q |
96 |
caatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctcc |
195 |
Q |
| |
|
|||||||||||||||| ||| ||||| | || |||||||||| ||||| || |||||| | |||||| || ||||||||||| | ||||||| |||| |
|
|
| T |
26894952 |
caatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccacttccactcc |
26894853 |
T |
|
| Q |
196 |
acaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
| |||||||||||| | |||| |||||| ||||||||||| |
|
|
| T |
26894852 |
cctaaaatgttgaagtggatattatatcattattgggactta |
26894811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 33194 - 33423
Alignment:
| Q |
10 |
agatggacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
105 |
Q |
| |
|
|||| ||||||||| | || ||||||||| ||||||||| |||||||||||||| ||||||||||||| || || ||| | ||||||||||||| |
|
|
| T |
33194 |
agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgtta |
33291 |
T |
|
| Q |
106 |
ttttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
205 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||| ||||| || |||||||| ||||| ||||||||||||||| | |||||||||| | ||||||||| |
|
|
| T |
33292 |
ttttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgt |
33391 |
T |
|
| Q |
206 |
tgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| |
|
|
| T |
33392 |
tgaagcgggtatgatatcaacattgagactta |
33423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 5788821 - 5789050
Alignment:
| Q |
10 |
agatggacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
105 |
Q |
| |
|
|||| ||||||||| | || ||||||||| ||||||||| |||||||||||||| ||||||||||||| || || ||| | ||||||||||||| |
|
|
| T |
5788821 |
agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgtta |
5788918 |
T |
|
| Q |
106 |
ttttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
205 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||| ||||| || |||||||| ||||| ||||||||||||||| | |||||||||| | ||||||||| |
|
|
| T |
5788919 |
ttttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgt |
5789018 |
T |
|
| Q |
206 |
tgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| |
|
|
| T |
5789019 |
tgaagcgggtatgatatcaacattgagactta |
5789050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 3395444 - 3395631
Alignment:
| Q |
48 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaata |
147 |
Q |
| |
|
|||||||||||||||| ||||||| |||| || || ||| | |||||| ||||||||||||| ||| | |||||||| |||||||||| ||||| || |
|
|
| T |
3395444 |
tatgagtcatctcacttatatgtttctcaacatctactatt--gcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagta |
3395541 |
T |
|
| Q |
148 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | | ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
3395542 |
tgagactctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattggaactta |
3395631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 43387134 - 43387277
Alignment:
| Q |
93 |
attcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
192 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||| |||||||||| |||| ||||||||||| |||||| |||||||| |||||| | ||||| || |
|
|
| T |
43387134 |
attcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccacttttgc |
43387232 |
T |
|
| Q |
193 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggactta |
237 |
Q |
| |
|
||| |||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
43387233 |
tcccaaaaaatgttgaaacggatatgatatcaccattgggactta |
43387277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 50253 - 50384
Alignment:
| Q |
93 |
attcaatgtgttattttaacccacgcttgacacatcaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
192 |
Q |
| |
|
|||||| ||||||||||||| || ||||||| || || |||||| ||||| ||||||||||| ||||||||||||||||| || | |||||| || |
|
|
| T |
50253 |
attcaacgtgttattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttctgc |
50352 |
T |
|
| Q |
193 |
tccacaaaaatgttgaagcgtatatgatatca |
224 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||| |
|
|
| T |
50353 |
tcccaaaaaacgttgaagcggatatgatatca |
50384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 14517 - 14442
Alignment:
| Q |
154 |
tcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccatt |
229 |
Q |
| |
|
||||||| ||| | |||||||| ||| | ||| |||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
14517 |
tcttcgtatccacaatccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccatt |
14442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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