View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_430 (Length: 241)

Name: NF11737A_low_430
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_430
NF11737A_low_430
[»] chr2 (1 HSPs)
chr2 (7-200)||(38483905-38484098)
[»] chr4 (2 HSPs)
chr4 (50-171)||(30118347-30118468)
chr4 (192-225)||(43516452-43516485)
[»] scaffold0043 (1 HSPs)
scaffold0043 (192-227)||(34313-34348)
[»] chr6 (2 HSPs)
chr6 (192-227)||(14843841-14843876)
chr6 (192-223)||(14686712-14686743)
[»] chr5 (1 HSPs)
chr5 (192-227)||(476614-476649)
[»] chr1 (5 HSPs)
chr1 (192-227)||(1248289-1248324)
chr1 (192-227)||(3544805-3544840)
chr1 (192-225)||(13867537-13867570)
chr1 (196-225)||(5808984-5809013)
chr1 (192-225)||(45795609-45795642)
[»] chr3 (3 HSPs)
chr3 (192-227)||(31675332-31675367)
chr3 (192-227)||(31921055-31921090)
chr3 (196-227)||(34829820-34829851)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 38483905 - 38484098
Alignment:
Q  7 gatggaggaacgcgatttgcaggttctgctgttaactgttgtttttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatgg 106  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38483905 gatggaggaacgcgatttgcaggttctgcttttaacggttgtttttacatggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatgg 38484004  T
Q  107 aggttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttactttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38484005 aggttggtttcaagggagacgaagttgcttggagttaggatggtgctgaaaagtatcgttgctgcagggtgggtcgttgttttttcttactttt 38484098  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 30118347 - 30118468
Alignment:
Q  50 tttacgtggagtggtttgaggttttttcaatctttgcttgatatagttatgcaatggaggttggtttcaagggagacgaagttgcttggagttaggatgg 149  Q
    ||||| ||||||||| |||||||||| || |||||||||||| | |  ||||| |  |||||||| || |||||||| ||| |||||||||| ||||||     
T  30118347 tttacatggagtggtatgaggtttttgcagtctttgcttgatgtgggcatgcagtataggttggtatcgagggagacaaagatgcttggagtgaggatgt 30118446  T
Q  150 tgctgaaaagtatcgttgctgc 171  Q
    | |||||| |||| ||||||||    
T  30118447 ttctgaaatgtattgttgctgc 30118468  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 43516452 - 43516485
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgt 225  Q
    |||||||||||||||||| |||||||||||||||    
T  43516452 cttacttttggtatgacaagtggcttggtgatgt 43516485  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 34313 - 34348
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  34313 cttacttttggtatgacaggtggcttggtgatgtcc 34348  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 14843841 - 14843876
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  14843841 cttacttttggtatgacaggtggcttggtgatgtcc 14843876  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 14686712 - 14686743
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgat 223  Q
    ||||||||||||||||||||||||||||||||    
T  14686712 cttacttttggtatgacaggtggcttggtgat 14686743  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 476649 - 476614
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  476649 cttacttttggtatgacaggtggcttggtgatgtcc 476614  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 1248289 - 1248324
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  1248289 cttacttttggtatgacaggtggcttggtgatgtcc 1248324  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 3544805 - 3544840
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  3544805 cttacttttggtatgacaggtggcttggtgatgtcc 3544840  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 13867537 - 13867570
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgt 225  Q
    ||||||||||||||||||||||||||||||||||    
T  13867537 cttacttttggtatgacaggtggcttggtgatgt 13867570  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Complemental strand, 5809013 - 5808984
Alignment:
Q  196 cttttggtatgacaggtggcttggtgatgt 225  Q
    ||||||||||||||||||||||||||||||    
T  5809013 cttttggtatgacaggtggcttggtgatgt 5808984  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 45795642 - 45795609
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgt 225  Q
    ||||||||||||||||||||||||| ||||||||    
T  45795642 cttacttttggtatgacaggtggctaggtgatgt 45795609  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 31675367 - 31675332
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    |||||||||||||||| |||||||||||||||||||    
T  31675367 cttacttttggtatgataggtggcttggtgatgtcc 31675332  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 31921055 - 31921090
Alignment:
Q  192 cttacttttggtatgacaggtggcttggtgatgtcc 227  Q
    |||||||||||||||| |||||||||||||||||||    
T  31921055 cttacttttggtatgataggtggcttggtgatgtcc 31921090  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 34829851 - 34829820
Alignment:
Q  196 cttttggtatgacaggtggcttggtgatgtcc 227  Q
    ||||||||||||||||||||||||||||||||    
T  34829851 cttttggtatgacaggtggcttggtgatgtcc 34829820  T

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