View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_434 (Length: 241)

Name: NF11737A_low_434
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_434
NF11737A_low_434
[»] chr2 (12 HSPs)
chr2 (4-235)||(29409387-29409618)
chr2 (88-224)||(21548407-21548543)
chr2 (91-203)||(21748649-21748761)
chr2 (123-227)||(25916709-25916812)
chr2 (91-203)||(17417569-17417682)
chr2 (91-227)||(45621995-45622130)
chr2 (123-227)||(22311885-22311989)
chr2 (82-196)||(27765747-27765861)
chr2 (89-227)||(19564503-19564642)
chr2 (88-143)||(26654884-26654939)
chr2 (108-203)||(13073538-13073631)
chr2 (130-202)||(27315634-27315706)
[»] chr7 (12 HSPs)
chr7 (88-225)||(22975132-22975269)
chr7 (88-228)||(1777181-1777321)
chr7 (100-226)||(17891467-17891593)
chr7 (98-190)||(19414533-19414625)
chr7 (100-184)||(10983877-10983961)
chr7 (88-195)||(32957449-32957556)
chr7 (168-226)||(10646889-10646947)
chr7 (100-196)||(26822185-26822282)
chr7 (98-158)||(17915455-17915515)
chr7 (88-200)||(19142111-19142223)
chr7 (88-200)||(20741510-20741622)
chr7 (164-196)||(27707463-27707495)
[»] scaffold0053 (1 HSPs)
scaffold0053 (91-227)||(27738-27874)
[»] chr1 (16 HSPs)
chr1 (88-196)||(17496786-17496894)
chr1 (88-227)||(12669207-12669346)
chr1 (100-203)||(17316517-17316620)
chr1 (98-190)||(24006390-24006482)
chr1 (132-226)||(30805953-30806047)
chr1 (88-227)||(19019239-19019378)
chr1 (88-195)||(26897909-26898016)
chr1 (100-196)||(25791595-25791690)
chr1 (133-203)||(37283460-37283530)
chr1 (133-226)||(33438826-33438919)
chr1 (103-226)||(12397682-12397805)
chr1 (123-212)||(15787896-15787985)
chr1 (133-198)||(22666162-22666227)
chr1 (153-203)||(14580788-14580838)
chr1 (165-198)||(19003270-19003303)
chr1 (12-44)||(11993252-11993284)
[»] chr6 (8 HSPs)
chr6 (88-227)||(18615341-18615480)
chr6 (88-229)||(19490794-19490935)
chr6 (88-228)||(10820981-10821121)
chr6 (91-198)||(14271687-14271795)
chr6 (132-196)||(10814927-10814991)
chr6 (100-203)||(4312242-4312345)
chr6 (100-226)||(4097878-4098004)
chr6 (123-219)||(29031883-29031976)
[»] chr5 (10 HSPs)
chr5 (88-227)||(24492543-24492682)
chr5 (88-203)||(30608393-30608508)
chr5 (88-212)||(6999047-6999172)
chr5 (91-202)||(22825996-22826107)
chr5 (108-190)||(9824131-9824213)
chr5 (100-202)||(25936354-25936454)
chr5 (101-203)||(24838499-24838601)
chr5 (98-143)||(19569800-19569845)
chr5 (161-203)||(37336559-37336601)
chr5 (160-196)||(26013648-26013684)
[»] chr4 (6 HSPs)
chr4 (88-203)||(18445788-18445903)
chr4 (100-226)||(19053078-19053204)
chr4 (100-203)||(17474239-17474342)
chr4 (133-203)||(19555449-19555519)
chr4 (123-195)||(14475186-14475258)
chr4 (100-203)||(47575562-47575665)
[»] chr3 (12 HSPs)
chr3 (92-200)||(46348829-46348937)
chr3 (88-226)||(19307046-19307184)
chr3 (100-199)||(19905614-19905711)
chr3 (88-203)||(27486091-27486206)
chr3 (132-226)||(13291801-13291895)
chr3 (88-190)||(21528228-21528330)
chr3 (88-196)||(14427365-14427473)
chr3 (157-202)||(4514600-4514645)
chr3 (102-157)||(13178044-13178099)
chr3 (152-198)||(10928875-10928921)
chr3 (133-190)||(8711330-8711387)
chr3 (133-190)||(9063217-9063274)
[»] chr8 (7 HSPs)
chr8 (159-203)||(26576535-26576579)
chr8 (153-203)||(18528220-18528270)
chr8 (88-143)||(13645127-13645182)
chr8 (88-143)||(13745552-13745607)
chr8 (164-203)||(28890221-28890260)
chr8 (98-143)||(5826175-5826220)
chr8 (98-143)||(5828774-5828819)
[»] scaffold0300 (1 HSPs)
scaffold0300 (98-158)||(11978-12038)
[»] scaffold0002 (1 HSPs)
scaffold0002 (102-157)||(128889-128944)
[»] scaffold0804 (1 HSPs)
scaffold0804 (153-203)||(505-555)
[»] scaffold0650 (1 HSPs)
scaffold0650 (157-202)||(5813-5858)
[»] scaffold0062 (1 HSPs)
scaffold0062 (98-163)||(2469-2534)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 235
Target Start/End: Original strand, 29409387 - 29409618
Alignment:
Q  4 atcaacatgggagacgtgaaatcaatcagaagaatcaatagggg-gatagggagaagtgtaatgcaaccacacaaggggagaaatgtcttgttaatcttc 102  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  29409387 atcaacaggggagacgtgcaatcaatcagaagaatcaataggggggatagggagaagtgtagtgcaatcacacaaggggagaaatgtctcgttaatcttc 29409486  T
Q  103 ttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgtt 202  Q
    || ||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  29409487 ttaaggtctttagcttcttttattggtagggatttgagagacgttagaaaagagtgccagcgcattaagagtctttgagaaacttcaaatcaaggacg-t 29409585  T
Q  203 gcgacattgcatgatatcgataattttattgga 235  Q
    | | ||||||||||||| ||||||||| |||||    
T  29409586 ggggcattgcatgatatggataattttgttgga 29409618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 21548543 - 21548407
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| |||||||||||||||||| || |||||||||| |||||||||||||  ||| || |||||||||||| ||||||||||| |||||||||||    
T  21548543 gtcttgttgatcttcttcaggtcttcagctccttttataggcagggatttgagaggcgttggagaagagtgccagcacattaagagtcgttgagaagctt 21548444  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgata 224  Q
    ||||| |||||||||| | |||||| |||||| ||||    
T  21548443 caaatgaaggacgttgggccattgcctgatatggata 21548407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 21748761 - 21748649
Alignment:
Q  91 ttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    ||||| |||||||| || |||||| || |||||||||| ||||||| |||||| |||||| ||||||| ||||| |||||||||| |||| |||||||||    
T  21748761 ttgttgatcttctttagatcttcagctccttttataggaagggattcgagagacgttagagaagagtgtcagcgaattaagagtcgttgaaaagcttcaa 21748662  T
Q  191 atcaaggacgttg 203  Q
    |||||||||||||    
T  21748661 atcaaggacgttg 21748649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 25916812 - 25916709
Alignment:
Q  123 tataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcga 222  Q
    |||||| |||||||||||||||||| || ||||||||||||  || ||||||| ||||||||||||||||||||||||||| | |||||| |||||| ||    
T  25916812 tataggcagggatttgagagatgtttgagaagagtgccagcagat-aagagtcgttgagaagcttcaaatcaaggacgttgagccattgcctgatatgga 25916714  T
Q  223 taatt 227  Q
    |||||    
T  25916713 taatt 25916709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 17417682 - 17417569
Alignment:
Q  91 ttgttaatcttcttca-ggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttca 189  Q
    |||||||||||||||| |||||||| || ||| |||||  | |||||||||||| ||| || |||||||||||||||| ||||||  |||||||||||||    
T  17417682 ttgttaatcttcttcatggtcttcagctccttatatagacatggatttgagagacgttggagaagagtgccagcgcataaagagttgttgagaagcttca 17417583  T
Q  190 aatcaaggacgttg 203  Q
     |||||||||||||    
T  17417582 tatcaaggacgttg 17417569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 45622130 - 45621995
Alignment:
Q  91 ttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    ||||||||||||||| | | |||||||  ||||||| ||||| |||| ||||| ||| || ||||||| | | ||||||||||||||||||||| ||| |    
T  45622130 ttgttaatcttcttcggatattcaactcattttatacgtagg-atttaagagacgttggagaagagtgtcggtgcattaagagtctttgagaagtttcca 45622032  T
Q  191 atcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    |||||||| |||| | |||||| |||||| |||||||    
T  45622031 atcaaggatgttgaggcattgcctgatatggataatt 45621995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 22311989 - 22311885
Alignment:
Q  123 tataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcga 222  Q
    |||||| ||||||||||||||  || || ||||||| |||||||||||||||| || | |||||||||||||||||| ||| | ||||||  ||||| ||    
T  22311989 tataggcagggatttgagagacattggagaagagtgtcagcgcattaagagtcattcacaagcttcaaatcaaggaccttgagccattgcccgatatgga 22311890  T
Q  223 taatt 227  Q
    |||||    
T  22311889 taatt 22311885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 27765861 - 27765747
Alignment:
Q  82 agaaatgtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgag 181  Q
    ||||| |||||||||   ||||||| ||||| |  | ||| |||||||  |||||||||||||||| || ||||||| || || |||||||||| |||||    
T  27765861 agaaaagtcttgttatggttcttcaagtctttatttccttatataggttaggatttgagagatgttggagaagagtgtcatcgtattaagagtcgttgag 27765762  T
Q  182 aagcttcaaatcaag 196  Q
    |||||||||||||||    
T  27765761 aagcttcaaatcaag 27765747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 19564503 - 19564642
Alignment:
Q  89 tcttgttaatcttcttca-ggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||||||| |||| ||| || || | ||| |||||| |||||||| ||||| ||| || ||||||||||| |||| ||||||| |||||| ||||    
T  19564503 tcttgttaatcttattcacggtgtttaaatccttatataggcagggatttaagagacgttggagaagagtgccagagcataaagagtcgttgagacgctt 19564602  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatt 227  Q
     ||||||||||  ||| | ||||||  ||||| |||||||    
T  19564603 aaaatcaaggatattgagccattgctagatatggataatt 19564642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 26654939 - 26654884
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    |||||||| ||||||||||||||||||||| ||| |||||| || |||||||||||    
T  26654939 gtcttgttgatcttcttcaggtcttcaactccttatataggcagtgatttgagaga 26654884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 13073538 - 13073631
Alignment:
Q  108 gtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    |||||||||| ||| |||||| |   |||||||||| |||||| | | ||  |||||||||||||||| ||||||| | ||||||||| |||||||    
T  13073538 gtcttcaactccttatataggcaaaaatttgagagacgttagagaggtgt--cagcgcattaagagtcgttgagaatcatcaaatcaaagacgttg 13073631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 27315634 - 27315706
Alignment:
Q  130 agggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgtt 202  Q
    |||||||||||||| ||| |  |||||||  ||||||| |||| |  ||||||||||||| ||||||||||||    
T  27315634 agggatttgagagacgttggggaagagtgttagcgcataaagaatggttgagaagcttcagatcaaggacgtt 27315706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 22975132 - 22975269
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||||||||| |||||||||| || | ||| |||||| || ||||||||||||||| || |||||| ||| | ||||||||| | |||||||||||    
T  22975132 gtcttgttaatctttttcaggtctttaattccttatataggcagagatttgagagatgttggagaagagttccaacacattaagagccgttgagaagctt 22975231  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataa 225  Q
    |||||||||||||||| | ||||||||||||| |||||    
T  22975232 caaatcaaggacgttgagtcattgcatgatatggataa 22975269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 1777321 - 1777181
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| || |||||||| |||||| || ||| ||||||||||||||||||||| ||| || ||||||| || | ||||| ||||| |||||||||||    
T  1777321 gtcttgttgattttcttcagatcttcagctccttatataggtagggatttgagagacgttggagaagagtgtcaacacattatgagtcgttgagaagctt 1777222  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataattt 228  Q
    |||||||||||||||| | |||||  | |||| ||||||||    
T  1777221 caaatcaaggacgttgggccattgactaatatggataattt 1777181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 17891593 - 17891467
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| |||||||||| ||| |||| | | |||||||||||| ||| || ||||||| || |||||||||||||  |||||||||||||||||||||     
T  17891593 ttcttcaagtcttcaactccttatataagcaaggatttgagagacgttggagaagagtgtcaacgcattaagagtcactgagaagcttcaaatcaaggat 17891494  T
Q  200 gttgcgacattgcatgatatcgataat 226  Q
    |||| | |||| | |||||| ||||||    
T  17891493 gttgggccattacctgatatggataat 17891467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 19414533 - 19414625
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    ||||||||||||||||| ||||||||||||  || ||||||||||| |||  | |||||||| ||||||   |||||| ||||||||||||||    
T  19414533 tcttcttcaggtcttcagcttcttttatagacagtgatttgagagacgttgaagaagagtgcaagcgcaaatagagtcgttgagaagcttcaa 19414625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 10983961 - 10983877
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaag 184  Q
    |||||||| |||||| | |||||||||||||| ||||||||||| ||| || |||| || |||||||   |||||| ||||||||    
T  10983961 ttcttcagatcttcagcatcttttataggtagtgatttgagagacgttggagaagaatgtcagcgcaaatagagtcattgagaag 10983877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 32957449 - 32957556
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| ||||||  |||||| |||||| | |||  | ||||| ||| || ||||||| ||||||||| ||||||  | ||||||||    
T  32957449 gtcttgttattgttcttcaagtcttctgcttcttatataggcaaggaaataagagacgttggagaagagtgtcagcgcatttagagtcgctaagaagctt 32957548  T
Q  188 caaatcaa 195  Q
    ||||||||    
T  32957549 caaatcaa 32957556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 10646947 - 10646889
Alignment:
Q  168 taagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcgataat 226  Q
    |||||||| |||||||||||||||||||||| |||| | |||||| || ||| ||||||    
T  10646947 taagagtcattgagaagcttcaaatcaaggatgttgggtcattgcctgttatggataat 10646889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 26822185 - 26822282
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttaga-aaagagtgccagcgcattaagagtctttgagaagcttcaaatcaag 196  Q
    ||||||| |||||||||| ||| ||||||||  ||||||||||||||| || ||  | || |||| |||||| |||| |||| || ||||||||||||    
T  26822185 ttcttcaagtcttcaactccttatataggtaaagatttgagagatgttggagaacaaatgtcagcacattaaaagtcgttgaaaaacttcaaatcaag 26822282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 17915455 - 17915515
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtg 158  Q
    |||| ||||||||||||||| |||| ||||| || |||||||||||| || || |||||||    
T  17915455 tctttttcaggtcttcaactcctttgataggcagtgatttgagagatattggagaagagtg 17915515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 19142111 - 19142223
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| ||||||||||  || ||| |  | |||| ||||||| ||| || |||||||||| || ||| |||||| |||  |||| |    
T  19142111 gtcttgttattattcttcaagtcttcaactcattatattgacaaggatatgagagacgttggagaagagtgccaacggatttagagtcgttggaaagcat 19142210  T
Q  188 caaatcaaggacg 200  Q
    |||||||||||||    
T  19142211 caaatcaaggacg 19142223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 20741510 - 20741622
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| ||||||||||  || ||| |  | |||| ||||||| ||| || |||||||||| || ||| |||||| |||  |||| |    
T  20741510 gtcttgttattattcttcaagtcttcaactcattatattgacaaggatatgagagacgttggagaagagtgccaacggatttagagtcgttggaaagcat 20741609  T
Q  188 caaatcaaggacg 200  Q
    |||||||||||||    
T  20741610 caaatcaaggacg 20741622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 27707495 - 27707463
Alignment:
Q  164 gcattaagagtctttgagaagcttcaaatcaag 196  Q
    |||||||||||| ||||||||||||||||||||    
T  27707495 gcattaagagtcgttgagaagcttcaaatcaag 27707463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 27738 - 27874
Alignment:
Q  91 ttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    ||||| |||||||| ||||||||| || ||| ||||||  ||||||||||||| ||| || |||||||||| || |||||||||| ||||||||||||||    
T  27738 ttgttgatcttctttaggtcttcagctacttatataggcggggatttgagagacgtttgagaagagtgccaacgtattaagagtcgttgagaagcttcaa 27837  T
Q  191 atcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    ||||||||||||| | |||||| |||||| |||||||    
T  27838 atcaaggacgttgggccattgcctgatatggataatt 27874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 17496894 - 17496786
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||  || || ||||||| |||||||||||||||| |||| ||||||    
T  17496894 gtcttgttgatcttcttcaggtcttcaactccttttataggcagggatttgagagacattggagaagagtgtcagcgcattaagagtcgttgaaaagctt 17496795  T
Q  188 caaatcaag 196  Q
    |||||||||    
T  17496794 caaatcaag 17496786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 12669346 - 12669207
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||||||||||| |||| ||| ||| |||||||||| | |||||||||||| ||| |  ||||||| || |||||| |||||| |||||||||||    
T  12669346 gtcttgttaatcttctttaggtattcgactccttttataggcatggatttgagagacgttggtgaagagtgtcaacgcatttagagtcgttgagaagctt 12669247  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    |||||||||||||||| |  ||||| |||||| |||||||    
T  12669246 caaatcaaggacgttgggtaattgcctgatatggataatt 12669207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 17316620 - 17316517
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| |||||||||||||| |||||| | |||||||||||| ||| || ||||||| |||||||||||||||| ||||||| ||||||||||||| |    
T  17316620 ttcttcaagtcttcaacttcttatataggcaaggatttgagagacgttggagaagagtgtcagcgcattaagagtcgttgagaatcttcaaatcaagggc 17316521  T
Q  200 gttg 203  Q
    ||||    
T  17316520 gttg 17316517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 24006482 - 24006390
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    |||||||||||||||||||| | | ||||||||||||||||||||| ||| || ||||||| ||| ||| | |||||| ||||||||||||||    
T  24006482 tcttcttcaggtcttcaactccgtatataggtagggatttgagagacgttggagaagagtgtcagtgcaattagagtcgttgagaagcttcaa 24006390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 30806047 - 30805953
Alignment:
Q  132 ggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcgataat 226  Q
    |||||||||| | ||| || || |||| |||||||||||||||| ||||||||||||||||||||||| |||   |||||| |||||| ||||||    
T  30806047 ggatttgagatacgtttgagaatagtgtcagcgcattaagagtcgttgagaagcttcaaatcaaggacattggaccattgcctgatatggataat 30805953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 19019378 - 19019239
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| |||||||||| ||||||| || ||| |||||| |  ||||| || || |||  | |||||||||| |||||||||| || |||||||| ||    
T  19019378 gtcttgtttatcttcttcatgtcttcatctccttatataggcaaagattttagggacgttgaagaagagtgccaccgcattaagaatcgttgagaagatt 19019279  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    ||||||||||  |||  | |||||| |||||| |||||||    
T  19019278 caaatcaagggtgtttggtcattgcctgatatggataatt 19019239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 26897909 - 26898016
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| |||||||||| ||| |||||| | |||||||||||| |||  | ||| ||| || ||||||||||||| ||||||| |||    
T  26897909 gtcttgttattattcttcaagtcttcaactccttatataggcaaggatttgagagacgttgaagaagcgtgtcaacgcattaagagtcgttgagaaactt 26898008  T
Q  188 caaatcaa 195  Q
     |||||||    
T  26898009 taaatcaa 26898016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Complemental strand, 25791690 - 25791595
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagct-tcaaatcaag 196  Q
    ||||||| |||||||||||||| |||||| | |||||||||||| ||| ||||  |||| || | ||||||||||| |||||||||| ||||||||||    
T  25791690 ttcttcaagtcttcaacttcttatataggcatggatttgagagacgttggaaa--agtgtcaactcattaagagtccttgagaagctatcaaatcaag 25791595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 37283530 - 37283460
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    ||||||||||| ||| || ||||||| || ||||| ||||||| ||||||||||||| |||||||||||||    
T  37283530 gatttgagagacgttggagaagagtgtcaacgcataaagagtcattgagaagcttcagatcaaggacgttg 37283460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 33438826 - 33438919
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcgataat 226  Q
    |||| |||||| ||| || ||||||| ||||||||||||| || |||||||  ||||||||||||| |||| | |||||| |||||| ||||||    
T  33438826 gattagagagacgttggagaagagtgtcagcgcattaagaatcgttgagaaatttcaaatcaaggaagttgggtcattgcctgatatggataat 33438919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 12397682 - 12397805
Alignment:
Q  103 ttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgtt 202  Q
    |||| ||||||| || ||| |||||| | |||||||||||| |||  | |||||||  |  |||||||||||| |||||||| ||||||||||||| |||    
T  12397682 ttcaagtcttcagctccttatataggcaaggatttgagagacgttgaagaagagtgttaatgcattaagagtcgttgagaagtttcaaatcaaggatgtt 12397781  T
Q  203 gcgacattgcatgatatcgataat 226  Q
    |   |||||| |||||| ||||||    
T  12397782 ggatcattgcctgatatggataat 12397805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 15787985 - 15787896
Alignment:
Q  123 tataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgc 212  Q
    |||||| |||||||||| |||  ||  | |||||||  ||| ||||||||||| |||||||||||||||||||||| |||| | ||||||    
T  15787985 tataggcagggatttgaaagacattgaataagagtgttagcacattaagagtcattgagaagcttcaaatcaaggatgttgggccattgc 15787896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 22666162 - 22666227
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaagga 198  Q
    |||||||||||||||  | |||||| | ||||||||||||||| |||||||||||  |||||||||    
T  22666162 gatttgagagatgttgtataagagttctagcgcattaagagtcattgagaagctttgaatcaagga 22666227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 14580838 - 14580788
Alignment:
Q  153 agagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    |||||| |||||||||||||||  ||||||| ||||||||||| |||||||    
T  14580838 agagtgtcagcgcattaagagttgttgagaaacttcaaatcaaagacgttg 14580788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 19003303 - 19003270
Alignment:
Q  165 cattaagagtctttgagaagcttcaaatcaagga 198  Q
    ||||||||||| ||||||||||||||||||||||    
T  19003303 cattaagagtcgttgagaagcttcaaatcaagga 19003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 11993284 - 11993252
Alignment:
Q  12 gggagacgtgaaatcaatcagaagaatcaatag 44  Q
    |||||| ||||||||||||||||||||||||||    
T  11993284 gggagaagtgaaatcaatcagaagaatcaatag 11993252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 18615480 - 18615341
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||| ||||||||||||||||||||| || ||| |||||| ||||||||||||||  || |||||| |||||| | ||||||||||  || ||||||||    
T  18615480 gtcttattaatcttcttcaggtcttcagctccttatataggcagggatttgagagacattggaaaagtgtgccaccacattaagagttgttaagaagctt 18615381  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    |||||||||||||||| | |||||| |||||| |||||||    
T  18615380 caaatcaaggacgttgagccattgcctgatattgataatt 18615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 19490794 - 19490935
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||| |||||| ||||||||||||||  | | | |||||  | |||||||||||| |||  | |  ||||||||||||||||||||| ||||||| |||    
T  19490794 gtcttcttaatcctcttcaggtcttcagttccatatatagccacggatttgagagacgttgcagagaagtgccagcgcattaagagtcattgagaatctt 19490893  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatttt 229  Q
    | |||||||||||||| | ||||||||||||| |||||||||    
T  19490894 cgaatcaaggacgttgagccattgcatgatatggataatttt 19490935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 10820981 - 10821121
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||||||||||||||||| |||| ||| || |||||| |  ||||||||||| ||  || ||||||| |||||||||||||||| |||| ||||||    
T  10820981 gtcttgttaatcttcttcaggtattcagctttttatataggcaaagatttgagagacgtcggagaagagtgtcagcgcattaagagtcattgaaaagctt 10821080  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataattt 228  Q
      ||||| ||| |||    |||||| |||||| ||||||||    
T  10821081 tgaatcatggatgttagaccattgcctgatatggataattt 10821121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 14271687 - 14271795
Alignment:
Q  91 ttgttaatcttcttca-ggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttca 189  Q
    ||||| || ||||||| ||| |||| || ||| |||||| |||||||||||||||||| || ||||||| ||  | || ||||||| |||||||||||||    
T  14271687 ttgtttatattcttcatggttttcatctccttatataggcagggatttgagagatgttggagaagagtggcattgtataaagagtcgttgagaagcttca 14271786  T
Q  190 aatcaagga 198  Q
    |||||||||    
T  14271787 aatcaagga 14271795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 10814991 - 10814927
Alignment:
Q  132 ggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaag 196  Q
    |||||||||||||||| || |||| || || || |||||||||| ||||||||||||||||||||    
T  10814991 ggatttgagagatgttggagaagaatgtcaacgtattaagagtcattgagaagcttcaaatcaag 10814927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 4312242 - 4312345
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| ||||||||||  || |||||| | |||||||||||| ||| ||  ||| || ||||||| ||||| |  |||||||||||||||||||| ||    
T  4312242 ttcttcaagtcttcaactctttatataggcaaggatttgagagacgttggagtagaatgtcagcgcagtaagacttattgagaagcttcaaatcaagaac 4312341  T
Q  200 gttg 203  Q
    ||||    
T  4312342 gttg 4312345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 4098004 - 4097878
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| ||||| | || ||| |||||| | | ||| |||||| ||| || ||||||| || ||||||||||||| |||| ||  || |||||||||||    
T  4098004 ttcttcaagtcttaagctccttatataggcaagaattcgagagacgttggagaagagtgtcaacgcattaagagtcgttgataaattttaaatcaaggac 4097905  T
Q  200 gttgcgacattgcatgatatcgataat 226  Q
    |||| || ||||| |||||| ||||||    
T  4097904 gttgggaaattgcctgatatggataat 4097878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 29031883 - 29031976
Alignment:
Q  123 tataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatat 219  Q
    |||||| | |||||||||||||||| ||   ||||  |||||||||||||||| || |||||||||||||||| ||| |||  |  |||||||||||    
T  29031883 tataggaaaggatttgagagatgttgga---gagtatcagcgcattaagagtcgttcagaagcttcaaatcaaagacattgaaatgttgcatgatat 29031976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 24492682 - 24492543
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||| ||| || ||||||| ||  ||||||||| || ||||||| | |    
T  24492682 gtcttgttgatcttcttcaggtattcaactccttttataggcagggatttgagagacgttcgagaagagtgtcattgcattaagaatcgttgagaaacat 24492583  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataatt 227  Q
    |||||||||||||||| | ||| || |||||| |||||||    
T  24492582 caaatcaaggacgttgggccatcgcctgatatggataatt 24492543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 30608508 - 30608393
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| |||||||||||||||||| ||  ||||||||| |||||||||||||| | | || ||||||| || ||||||||||||  |||||||| ||    
T  30608508 gtcttgttgatcttcttcaggtcttcagctcattttataggcagggatttgagagacgatggagaagagtgtcatcgcattaagagttgttgagaagttt 30608409  T
Q  188 caaatcaaggacgttg 203  Q
    ||||||||||||||||    
T  30608408 caaatcaaggacgttg 30608393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 6999172 - 6999047
Alignment:
Q  88 gtcttgttaatcttcttca-ggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagct 186  Q
    ||||||||||||||||||| |||||||  || ||| |||||| |||||||||||||| ||| || |||||||||| | ||| ||||||| |||||||| |    
T  6999172 gtcttgttaatcttcttcatggtcttctgctccttatataggcagggatttgagagacgttggagaagagtgccaacacataaagagtcgttgagaagtt 6999073  T
Q  187 tcaaatcaaggacgttgcgacattgc 212  Q
    ||||||||||||||||| | ||||||    
T  6999072 tcaaatcaaggacgttgagccattgc 6999047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 22825996 - 22826107
Alignment:
Q  91 ttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    |||||| | ||||||| | ||||| || ||| |||||| | |||||||| ||||||| || |||| || |||||||||||||||| |||||||| |||||    
T  22825996 ttgttattgttcttcaagccttcagctccttatataggcaaggatttgaaagatgtttgagaagaatgtcagcgcattaagagtcgttgagaagtttcaa 22826095  T
Q  191 atcaaggacgtt 202  Q
    |||||| |||||    
T  22826096 atcaagaacgtt 22826107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 9824131 - 9824213
Alignment:
Q  108 gtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    ||||||| || ||| |||||||||||||||||||||||||  | |||||||||||||||   |||||| ||||||||||||||    
T  9824131 gtcttcagctccttatataggtagggatttgagagatgttgaagaagagtgccagcgcaaatagagtcgttgagaagcttcaa 9824213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 25936454 - 25936354
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| ||||||| || ||| |||||| | |||||||||||| ||| || | |  ||||| ||||||||||||| ||||||||| ||||||||| |||    
T  25936454 ttcttcaagtcttcagctccttatataggcaaggatttgagagacgttggagagg--tgccaacgcattaagagtccttgagaagcatcaaatcaaagac 25936357  T
Q  200 gtt 202  Q
    |||    
T  25936356 gtt 25936354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 24838601 - 24838499
Alignment:
Q  101 tcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacg 200  Q
    |||| ||||||||| || ||| |||||| |  ||||||||||| ||| || | || || || ||||||||||| | | ||||||||||||||||||||||    
T  24838601 tcttaaggtcttcagctccttatataggcaaagatttgagagacgttggagaggaatgacaacgcattaagagacatcgagaagcttcaaatcaaggacg 24838502  T
Q  201 ttg 203  Q
    |||    
T  24838501 ttg 24838499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 19569845 - 19569800
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||    
T  19569845 tctttttcaggtcttcaacttcttatataggtagtgatttgagaga 19569800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 37336559 - 37336601
Alignment:
Q  161 agcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||    
T  37336559 agcgcattaagagtcattgagaagtttcaaatcaagaacgttg 37336601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 26013648 - 26013684
Alignment:
Q  160 cagcgcattaagagtctttgagaagcttcaaatcaag 196  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  26013648 cagcgtattaagagtcattgagaagcttcaaatcaag 26013684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 18445788 - 18445903
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||| ||||| |||||||||||| || ||| |||||| |||||||||||||| ||| || || ||||  ||||||||||||||| |||||||||||    
T  18445788 gtcttgttgatctttttcaggtcttcagctccttatataggcagggatttgagagacgttggagaatagtgtaagcgcattaagagtcgttgagaagctt 18445887  T
Q  188 caaatcaaggacgttg 203  Q
     ||| |||||| ||||    
T  18445888 taaaccaaggatgttg 18445903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 19053078 - 19053204
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| |||||||||| ||| |||||| | ||||| |||  | ||| || |||||||||| | ||||||||||| || |||||||||||||||||| |    
T  19053078 ttcttcaagtcttcaactccttatataggcaaggattagaggaacgttggagaagagtgccaacacattaagagtcgttaagaagcttcaaatcaagggc 19053177  T
Q  200 gttgcgacattgcatgatatcgataat 226  Q
    |||| | |||||| |||||| ||||||    
T  19053178 gttgggccattgcctgatatggataat 19053204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 17474342 - 17474239
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| ||||| | |||||| |||||| | |||||||||||| |||  | ||||||| ||||||||||||| |  |||| ||||||||||||| ||||    
T  17474342 ttcttcaagtctttagcttcttatataggcaaggatttgagagacgttgaagaagagtgtcagcgcattaagatttgttgaaaagcttcaaatcagggac 17474243  T
Q  200 gttg 203  Q
    ||||    
T  17474242 gttg 17474239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 19555519 - 19555449
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    ||||||||||| ||| || ||||||| || ||||| |||| || |||||||||||||||||||||||||||    
T  19555519 gatttgagagacgttggagaagagtgtcatcgcataaagattcgttgagaagcttcaaatcaaggacgttg 19555449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 14475186 - 14475258
Alignment:
Q  123 tataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaa 195  Q
    |||||| | |||||||||||| |||||| |||||||||| | ||||||||||| |||| |||||| |||||||    
T  14475186 tataggcaaggatttgagagacgttagataagagtgccaacacattaagagtcgttgaaaagctttaaatcaa 14475258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 47575562 - 47575665
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||| || |||| ||| || |||||| | |||||||||||| ||| || |||||||||| | |||||||| || ||||||   ||||||||||||||    
T  47575562 ttcttcaagttttcagctttttatatagggaaggatttgagagaagttggagaagagtgccaacacattaagattcgttgagataattcaaatcaaggac 47575661  T
Q  200 gttg 203  Q
    ||||    
T  47575662 gttg 47575665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 46348829 - 46348937
Alignment:
Q  92 tgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaa 191  Q
    |||||||||| ||||| |||||| ||  || |||||||||| |||||||||| ||| || |||||||||| |||| ||| |||| |||| ||||||||||    
T  46348829 tgttaatctttttcagatcttcagctctttatataggtaggaatttgagagacgttggataagagtgccaacgcactaaaagtcgttgaaaagcttcaaa 46348928  T
Q  192 tcaaggacg 200  Q
    | |||||||    
T  46348929 ttaaggacg 46348937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 19307184 - 19307046
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| || || || | ||| |||||| | |||||||||||| | | || ||||||| ||| |||||||||||| |||||||||||    
T  19307184 gtcttgttattgttcttcaagtgttaaagtccttatataggcaaggatttgagagacgctggagaagagtgtcagtgcattaagagtcattgagaagctt 19307085  T
Q  188 caaatcaaggacgttgcgacattgcatgatatcgataat 226  Q
    |||||||| || |||| | |||| | |||||| ||||||    
T  19307084 caaatcaaagatgttgggccatttcctgatatggataat 19307046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 19905614 - 19905711
Alignment:
Q  100 ttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggac 199  Q
    ||||||||||||||||||  || ||||||   |||||||||||| ||| || | |  ||||||||||||||||||| |||||||| ||||||||||||||    
T  19905614 ttcttcaggtcttcaactctttatataggctaggatttgagagacgttggagagg--tgccagcgcattaagagtcgttgagaagtttcaaatcaaggac 19905711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 27486206 - 27486091
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||||||||| || ||||||| | ||  || |||| | ||| |||||||||| |||  | ||||||||||| | ||||||| || |||||||||||    
T  27486206 gtcttgttaatctttttaaggtctttagctctttatatatgaaggaatttgagagacgttgaagaagagtgccagtgtattaagaatcattgagaagctt 27486107  T
Q  188 caaatcaaggacgttg 203  Q
    ||||||||||| ||||    
T  27486106 caaatcaaggaagttg 27486091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 13291895 - 13291801
Alignment:
Q  132 ggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttgcgacattgcatgatatcgataat 226  Q
    |||||||||||| ||| || ||||||| || |||||||||| || |||||||| |||||||||||||| ||| | |||| | |||||| ||||||    
T  13291895 ggatttgagagacgttggagaagagtgtcaacgcattaagaatcgttgagaagtttcaaatcaaggacattgggccatttcctgatatggataat 13291801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 21528330 - 21528228
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    |||||||||||||||||||||||| ||||| ||| |||||| ||  |||||| ||| ||| || ||||||| |||||||   |||||| ||||||| |||    
T  21528330 gtcttgttaatcttcttcaggtctacaactccttgtataggcagtcatttgacagaggttcgagaagagtgtcagcgcaaatagagtcgttgagaatctt 21528231  T
Q  188 caa 190  Q
    |||    
T  21528230 caa 21528228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 14427473 - 14427365
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagctt 187  Q
    ||||||||| | ||||||| || |||| ||  || |||||| || ||| ||||||| |||||  ||||||||||||||||||||| || ||||||| | |    
T  14427473 gtcttgttattgttcttcaagttttcagctcgttatataggcagtgatatgagagacgttagtgaagagtgccagcgcattaagattcgttgagaaacat 14427374  T
Q  188 caaatcaag 196  Q
    |||||||||    
T  14427373 caaatcaag 14427365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 4514600 - 4514645
Alignment:
Q  157 tgccagcgcattaagagtctttgagaagcttcaaatcaaggacgtt 202  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||    
T  4514600 tgccagcgcattgagagtcgttgagaagtttcaaatcaaggacgtt 4514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 13178099 - 13178044
Alignment:
Q  102 cttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagt 157  Q
    |||||||||||||||| |||||||||| || |||||||||||  || |||||||||    
T  13178099 cttcaggtcttcaactccttttataggcagtgatttgagagacattggaaaagagt 13178044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 10928875 - 10928921
Alignment:
Q  152 aagagtgccagcgcattaagagtctttgagaagcttcaaatcaagga 198  Q
    |||||||||| | ||||||||||| ||||||||||| ||||||||||    
T  10928875 aagagtgccaacacattaagagtcgttgagaagcttgaaatcaagga 10928921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 8711387 - 8711330
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||   |||||| ||||||||||||||    
T  8711387 gatttgagagatgttagagaagagtcccaacgcaaatagagtcgttgagaagcttcaa 8711330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 9063274 - 9063217
Alignment:
Q  133 gatttgagagatgttagaaaagagtgccagcgcattaagagtctttgagaagcttcaa 190  Q
    |||||||||||||||||| |||||| ||| ||||   |||||| ||||||||||||||    
T  9063274 gatttgagagatgttagagaagagtcccaacgcaaatagagtcgttgagaagcttcaa 9063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 26576535 - 26576579
Alignment:
Q  159 ccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  26576535 ccagcgcattaagagtcgttgagaagcttcaaatcaaggacgttg 26576579  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 18528270 - 18528220
Alignment:
Q  153 agagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    ||||||||| | ||||||||||||||||||||| ||||||||| |||||||    
T  18528270 agagtgccaacacattaagagtctttgagaagcatcaaatcaaagacgttg 18528220  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 13645127 - 13645182
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    ||||||||||||||||||||||||||| || ||| |||||| ||  ||||||||||    
T  13645127 gtcttgttaatcttcttcaggtcttcagctccttatataggcagtcatttgagaga 13645182  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 13745552 - 13745607
Alignment:
Q  88 gtcttgttaatcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    ||||||||||||||||||||||||||| || ||| |||||| ||  ||||||||||    
T  13745552 gtcttgttaatcttcttcaggtcttcagctccttatataggcagtcatttgagaga 13745607  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 28890221 - 28890260
Alignment:
Q  164 gcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  28890221 gcattaagagtcgttgagaagcttcaaatcaaggatgttg 28890260  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 5826175 - 5826220
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    ||||||||||||||||| || |||||||||| || |||||||||||    
T  5826175 tcttcttcaggtcttcagctccttttataggcagtgatttgagaga 5826220  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 5828774 - 5828819
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagaga 143  Q
    ||||||||||||||||| || |||||||||| || |||||||||||    
T  5828774 tcttcttcaggtcttcagctccttttataggcagtgatttgagaga 5828819  T

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Target: scaffold0300 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 11978 - 12038
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtg 158  Q
    |||||||||||| |||| || ||||||||||||| ||||||||||| ||| || |||||||    
T  11978 tcttcttcaggtattcatctccttttataggtagtgatttgagagacgttggagaagagtg 12038  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 128889 - 128944
Alignment:
Q  102 cttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagt 157  Q
    |||||||||||||||| |||||||||| || |||||||||||  || |||||||||    
T  128889 cttcaggtcttcaactccttttataggcagtgatttgagagacattggaaaagagt 128944  T

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Target: scaffold0804 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 555 - 505
Alignment:
Q  153 agagtgccagcgcattaagagtctttgagaagcttcaaatcaaggacgttg 203  Q
    |||||| |||||||||||||||  ||||||| ||||||||||| |||||||    
T  555 agagtgtcagcgcattaagagttgttgagaaacttcaaatcaaagacgttg 505  T

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Target: scaffold0650 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 5813 - 5858
Alignment:
Q  157 tgccagcgcattaagagtctttgagaagcttcaaatcaaggacgtt 202  Q
    ||||| ||||||||||||| || ||||||||||||||||| |||||    
T  5813 tgccaacgcattaagagtcatttagaagcttcaaatcaagaacgtt 5858  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 2469 - 2534
Alignment:
Q  98 tcttcttcaggtcttcaacttcttttataggtagggatttgagagatgttagaaaagagtgccagc 163  Q
    ||||||| |||||||||||| ||| |||| | || ||||||||||| ||| || ||||||||||||    
T  2469 tcttctttaggtcttcaactccttatataagcagtgatttgagagacgttggagaagagtgccagc 2534  T

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