View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_435 (Length: 241)

Name: NF11737A_low_435
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_435
NF11737A_low_435
[»] chr7 (4 HSPs)
chr7 (1-238)||(4008418-4008655)
chr7 (1-238)||(4013810-4014047)
chr7 (99-147)||(5409787-5409835)
chr7 (8-120)||(26329354-26329466)
[»] scaffold0376 (1 HSPs)
scaffold0376 (41-125)||(6320-6404)
[»] chr5 (1 HSPs)
chr5 (41-147)||(32766888-32766994)
[»] chr1 (3 HSPs)
chr1 (99-159)||(1486648-1486708)
chr1 (40-140)||(6612123-6612223)
chr1 (41-147)||(9828052-9828158)
[»] chr8 (4 HSPs)
chr8 (99-147)||(22197687-22197735)
chr8 (25-117)||(4122224-4122316)
chr8 (91-143)||(12570458-12570510)
chr8 (91-143)||(12570684-12570736)
[»] scaffold0053 (1 HSPs)
scaffold0053 (99-147)||(8853-8901)
[»] chr4 (2 HSPs)
chr4 (99-147)||(3947717-3947765)
chr4 (99-147)||(23292942-23292990)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4008655 - 4008418
Alignment:
Q  1 gacatccgacatgacacagacactgatacgtcgatatctttaataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatg 100  Q
    |||||| || |||||||||| ||||| |||  || | ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  4008655 gacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcgatg 4008556  T
Q  101 tcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttgaca 200  Q
    || |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4008555 tccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttgaca 4008456  T
Q  201 acgtacaagacggagttgtctttcatattattcgacat 238  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  4008455 acgtacaagacggagttgtctttcatatttttcaacat 4008418  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4014047 - 4013810
Alignment:
Q  1 gacatccgacatgacacagacactgatacgtcgatatctttaataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatg 100  Q
    |||||| || |||||||||| ||||| |||  || | ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  4014047 gacatcagatatgacacagaaactgacacgcagacacctttaataatttgataaaattacatgattcaatgtaattgtatgtgtcggtattgtatcgatg 4013948  T
Q  101 tcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttctgtgtggcagtttattgagcttgttgtgcagcagtttgaca 200  Q
    || |||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4013947 tccgacacggcacgtgtccgacgccaggatacacctaatctgaggagagtatgtgcttctgtgtggcagattattgagcttgttgtgcagcagtttgaca 4013848  T
Q  201 acgtacaagacggagttgtctttcatattattcgacat 238  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  4013847 acgtacaagacggagttgtctttcatatttttcaacat 4013810  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 5409835 - 5409787
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 147  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  5409835 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 5409787  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 26329466 - 26329354
Alignment:
Q  8 gacatgacacagacactgatacgtcgatatctttaataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggaca 107  Q
    |||| |||||||||||||| ||| ||| ||| |||||||||||| ||||   ||  ||||| ||| ||| ||||||||||  | || ||| |||| ||||    
T  26329466 gacacgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagaca 26329367  T
Q  108 tgacacgtgtccg 120  Q
     ||||||||||||    
T  26329366 cgacacgtgtccg 26329354  T

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Target: scaffold0376 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 6320 - 6404
Alignment:
Q  41 taataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgcc 125  Q
    ||||||||||| |||| ||||| ||||||||| ||| ||||||||||| | |||||| ||| || || |||||| ||||||||||    
T  6320 taataatttgacaaaattgcataattcaatgtaattatatgtgtcggtgtcgtatcggtgtggggcacgacacgggtccgacgcc 6404  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 32766994 - 32766888
Alignment:
Q  41 taataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 140  Q
    ||||||||||| ||||  |||  ||||||||| ||| |||||||  || | || ||| ||||| | | |||||||||||||| |||||||||| ||||||    
T  32766994 taataatttgagaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatc 32766895  T
Q  141 tgaggag 147  Q
    |||||||    
T  32766894 tgaggag 32766888  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 1486708 - 1486648
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggagagtatgtgcttc 159  Q
    ||||||||| |||||||||||||| || ||| |||||||||| |||||| || ||||||||    
T  1486708 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttc 1486648  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 6612223 - 6612123
Alignment:
Q  40 ttaataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaat 139  Q
    |||||||||||| |||| | ||| ||||| ||| |||  | |||||||| | || ||||||||||||| || | ||||||||| |||||| |||||||||    
T  6612223 ttaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcctaat 6612124  T
Q  140 c 140  Q
    |    
T  6612123 c 6612123  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 9828052 - 9828158
Alignment:
Q  41 taataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatc 140  Q
    ||||||||||||||||   ||| ||||| ||| ||| ||||||||||| | || ||  |||| |||| |||||||||||||| || ||| ||| ||||||    
T  9828052 taataatttgataaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatc 9828151  T
Q  141 tgaggag 147  Q
     ||||||    
T  9828152 cgaggag 9828158  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 22197735 - 22197687
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggat-acgcctaatctgaggag 147  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||||    
T  22197735 tgtcggacatgacacgtgtccgacacc-ggatcacgcctaatctgaggag 22197687  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 4122316 - 4122224
Alignment:
Q  25 gatacgtcgatatctttaataatttgataaaagtgcatgattcaatgtcattgtatgtgtcggtattgtatcgatgtcggacatgacacgtgt 117  Q
    |||||||||| ||| ||||||||| ||||||| |  || ||||| ||| ||| ||||||||||| |||| || |||||  ||| |||||||||    
T  4122316 gatacgtcgacatcattaataattagataaaattatataattcattgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgt 4122224  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 12570510 - 12570458
Alignment:
Q  91 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 143  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570510 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570458  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 12570736 - 12570684
Alignment:
Q  91 tgtatcgatgtcggacatgacacgtgtccgacgccaggatacgcctaatctga 143  Q
    ||||||| |||| ||||  ||||||||||||| |||||| |||||||||||||    
T  12570736 tgtatcggtgtcagacactacacgtgtccgacaccaggacacgcctaatctga 12570684  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 8853 - 8901
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 147  Q
    ||||||||| |||||||||||||| ||  || |||||||||||||||||    
T  8853 tgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggag 8901  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 3947765 - 3947717
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 147  Q
    ||||||||| |||||||||||||| |||||| || ||||||| ||||||    
T  3947765 tgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggag 3947717  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 23292990 - 23292942
Alignment:
Q  99 tgtcggacatgacacgtgtccgacgccaggatacgcctaatctgaggag 147  Q
    ||||||||| |||||||||||||| || ||| |||||||||| ||||||    
T  23292990 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggag 23292942  T

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