View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_437 (Length: 240)

Name: NF11737A_low_437
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_437
NF11737A_low_437
[»] chr6 (10 HSPs)
chr6 (10-240)||(33386710-33386940)
chr6 (21-202)||(33261262-33261443)
chr6 (21-201)||(33283289-33283469)
chr6 (8-98)||(33386663-33386753)
chr6 (151-235)||(33386904-33386988)
chr6 (44-147)||(33417413-33417516)
chr6 (8-84)||(33283211-33283287)
chr6 (21-84)||(33261203-33261266)
chr6 (151-201)||(33261440-33261490)
chr6 (151-201)||(33283466-33283516)
[»] scaffold0428 (3 HSPs)
scaffold0428 (21-201)||(5052-5232)
scaffold0428 (8-84)||(4974-5050)
scaffold0428 (151-201)||(5229-5279)
[»] chr2 (4 HSPs)
chr2 (6-147)||(17442205-17442346)
chr2 (6-100)||(17442070-17442164)
chr2 (161-202)||(17442165-17442206)
chr2 (151-240)||(17442020-17442115)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 33386940 - 33386710
Alignment:
Q  10 acatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaacctattca 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33386940 acatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgaagaagattcagatgctgtaatttaaattattgaagaacctattca 33386841  T
Q  110 gacagatattgcaacaagcaatgtcgaaaatgactcactgtttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacatccgatac 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386840 gacagatattgcaacaagcaatgtcgaaaatgactcactggttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacatccgatac 33386741  T
Q  210 gacacggaaactgtaaattcaaatgccaaaa 240  Q
    |||||||| |||||||||||| |||||||||    
T  33386740 gacacggacactgtaaattcagatgccaaaa 33386710  T

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Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 33261443 - 33261262
Alignment:
Q  21 gacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaacctattcagacagatattg 120  Q
    |||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33261443 gacacggacactgtaaattcagatgctgaaagtttggtatctaaagaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattg 33261344  T
Q  121 caacaagcaatgtcgaaaatgactcactgtttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacat 202  Q
    ||||| |||||||||||| ||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33261343 caacatgcaatgtcgaaactgactcaccagttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggacat 33261262  T

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Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 33283469 - 33283289
Alignment:
Q  21 gacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaacctattcagacagatattg 120  Q
    |||| |||||| ||| ||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33283469 gacacggacaccgtagattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattg 33283370  T
Q  121 caacaagcaatgtcgaaaatgactcactgtttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggaca 201  Q
    ||||| |||||||||||| ||||| ||   |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  33283369 caacatgcaatgtcgaaactgacttaccagttggtcggttcctcgaaaactgttgccaacaaggtagcacggatacggaca 33283289  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 33386753 - 33386663
Alignment:
Q  8 ggacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaa 98  Q
    ||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||| |||||| | ||||||||||| || ||||||||||    
T  33386753 ggacatccgatacgacacggacactgtaaattcagatgccaaaagtttggtttctgaagaagacttagatgctgtaaattcaattattgaa 33386663  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 33386988 - 33386904
Alignment:
Q  151 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggacatccgatacgacacggaaactgtaaattcaaatgc 235  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||| ||||| ||||||||| ||| |||||||||||| ||||    
T  33386988 ttggtcggttcctcaacaacttttgccaacaaggtagcacggatacgaacatcagatacgacatggacactgtaaattcagatgc 33386904  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 33417516 - 33417413
Alignment:
Q  44 tgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaacctattcagacagatattgcaacaagcaatgtcgaaaatgac 143  Q
    |||||||||| ||| ||| | |||||||| ||||||||||| || |||||| || ||| |||||||||||||||||||||||||||| ||||||| |||     
T  33417516 tgctgaaagtctggcttcagaagaagatttagatgctgtaaattcaattatcgaggaagctattcagacagatattgcaacaagcaacgtcgaaactgat 33417417  T
Q  144 tcac 147  Q
    ||||    
T  33417416 tcac 33417413  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 33283287 - 33283211
Alignment:
Q  8 ggacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaa 84  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||| |||| || |||||| |  ||||||||||    
T  33283287 ggacatcagatacgacacagacactgtaaactcagatgctgaaagtttagtttatgaagaagacttggatgctgtaa 33283211  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 33261266 - 33261203
Alignment:
Q  21 gacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaa 84  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||| |  ||||||||||    
T  33261266 gacatggacactgtaaattcagatgctgaaagtttagtttatgaagaagacttggatgctgtaa 33261203  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 33261490 - 33261440
Alignment:
Q  151 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggaca 201  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||||||||||    
T  33261490 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggaca 33261440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 33283516 - 33283466
Alignment:
Q  151 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggaca 201  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  33283516 ttggtcggttcctcagcaactgttgccaacaaggtaacacggatacggaca 33283466  T

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Target: scaffold0428 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 5232 - 5052
Alignment:
Q  21 gacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaacctattcagacagatattg 120  Q
    |||| |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  5232 gacacggacactgtaaattcagatgctgaaagtttggtttctcaggaagattcagatgctgtaatttcaattattgaagaagctattcagacagatattg 5133  T
Q  121 caacaagcaatgtcgaaaatgactcactgtttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggaca 201  Q
    ||||| |||||||||||| ||||| ||   |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5132 caacatgcaatgtcgaaactgacttaccagttggtcggttcctcgacaactgttgccaacaaggtagcacggatacggaca 5052  T

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Target: scaffold0428; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 5050 - 4974
Alignment:
Q  8 ggacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaa 84  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||| |||| || |||||| |  ||||||||||    
T  5050 ggacatcagatacgacacagacactgtaaactcagatgctgaaagtttagtttttgaagaagacttggatgctgtaa 4974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 5279 - 5229
Alignment:
Q  151 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatacggaca 201  Q
    ||||||||||||||  |||||||||| ||||||||||||| ||||||||||    
T  5279 ttggtcggttcctcagcaactgttgccaacaaggtagcacagatacggaca 5229  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 17442205 - 17442346
Alignment:
Q  6 atggacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaagaaccta 105  Q
    ||||||| | ||||| |||  |||||||||||||||||||||||||||||||||| || ||| || | ||||||||||| || |||||||||| |  |||    
T  17442205 atggacaccggatacaacacagacactgtaaattcagatgctgaaagtttggtttttgaagaggacttagatgctgtaaattcaattattgaaaagacta 17442304  T
Q  106 ttcagacagatattgcaacaagcaatgtcgaaaatgactcac 147  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17442305 ttcagacagatattgcaacaagcaatgtcgaaactgactcac 17442346  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 17442070 - 17442164
Alignment:
Q  6 atggacatcagatacgacatggacactgtaaattcagatgctgaaagtttggtttctgcagaagattcagatgctgtaatttaaattattgaaga 100  Q
    ||||||| | ||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||| | ||||||||||| || ||||||||||||    
T  17442070 atggacaccggatacgacacggacactataaattcagatgctaaaagtttggtttctgaagaagacttagatgctgtaaattcaattattgaaga 17442164  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 17442165 - 17442206
Alignment:
Q  161 cctcgacaactgttgcaaacaaggtagcacggatacggacat 202  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  17442165 cctcaacaactgttgccaacaaggtagcacggatacggacat 17442206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 17442020 - 17442115
Alignment:
Q  151 ttggtcggttcctcgacaactgttgcaaacaaggtagcacggatac------ggacatccgatacgacacggaaactgtaaattcaaatgccaaaa 240  Q
    |||||| ||||||| ||||||||||| ||||||||||||| |||||      ||||| | ||||||||||||| ||| |||||||| |||| ||||    
T  17442020 ttggtcagttcctcaacaactgttgccaacaaggtagcactgatacagacatggacaccggatacgacacggacactataaattcagatgctaaaa 17442115  T

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