View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_438 (Length: 240)
Name: NF11737A_low_438
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_438 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 42208007 - 42207782
Alignment:
| Q |
15 |
catcaaactccttaagccccaccaatgtctcaattgcaaactctttgtccagatcaaaatattccaaaggaatatccattcttgaatcaaaatcctcatc |
114 |
Q |
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| T |
42208007 |
catcaaattccttgagccccaccaatgtctcaattgcacactctttgtccagatcaaaatattccaaaggaatatccattcttgaatcaaaatcctcatc |
42207908 |
T |
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| Q |
115 |
acctttttgttcatccccctttatccgagatgcggttgatctagagtcgaaaacacgtcttttactaggtgagctacagaatgagctttcctcagaatcc |
214 |
Q |
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| T |
42207907 |
acctttttgttcatccccctttatccgagatgcggttgatctagagtcgaaaacaagtcttttactaggtgagctacagaatgagctttcctcagaatcc |
42207808 |
T |
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| Q |
215 |
caattgaattccccttcaaatggcca |
240 |
Q |
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| T |
42207807 |
caattgaattccccttcaaatggcca |
42207782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 42214754 - 42214609
Alignment:
| Q |
95 |
cttgaatcaaaatcctcatcacctttttgttcatccccctttatccgagatgcggttgatctagagtcgaaaacacgtcttttactaggtgagctacaga |
194 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| | |
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| T |
42214754 |
cttgaatcaaaatcatcatcacctttttgttcatccctctttatccgagatgcagttgatccagagtcgaaaacaagtcttttcctaggtgagctacaaa |
42214655 |
T |
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| Q |
195 |
atgagctttcctcagaatcccaattgaattccccttcaaatggcca |
240 |
Q |
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| T |
42214654 |
atgagctctcctcagaatcccaactaaattcccctttaaatggcca |
42214609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 42214813 - 42214763
Alignment:
| Q |
15 |
catcaaactccttaagccccaccaatgtctcaattgcaaactctttgtcca |
65 |
Q |
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| T |
42214813 |
catcaaattccttgagccccaccaatgtctcaattgcacactctttgtcca |
42214763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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