View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_44 (Length: 435)
Name: NF11737A_low_44
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_44 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
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| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
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| [»] scaffold0282 (1 HSPs) |
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| [»] scaffold0107 (1 HSPs) |
| | |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 10787425 - 10787017
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| || || |||||||||| |
|
|
| T |
10787425 |
atggacatcacatgttctgcattctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatgga |
10787326 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10787325 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctctt |
10787226 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10787225 |
ttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctc |
10787126 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||| || |||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
10787125 |
agttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaata |
10787026 |
T |
|
| Q |
413 |
tgatgtcca |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
10787025 |
tgatctcca |
10787017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 14688368 - 14688776
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||| |||| ||||| |
|
|
| T |
14688368 |
atggacatcacatgttctgcattttgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatgga |
14688467 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14688468 |
tgctggctctgtgaccgccctgtatttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgatttttggtctctt |
14688567 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14688568 |
ttggagacaagaaacgtcgcgcgctatcgcagagatataacgggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctc |
14688667 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
| ||||| || |||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
14688668 |
ggttggtccgtcgtcgattctgcaacaactggcacaactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaata |
14688767 |
T |
|
| Q |
413 |
tgatgtcca |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
14688768 |
tgatctcca |
14688776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 7360370 - 7360778
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| | |||||| |||||||||| ||||| |||| ||||| |
|
|
| T |
7360370 |
atggacaccacatgttctgcattttgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatgga |
7360469 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
7360470 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctctt |
7360569 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| |||||||| | ||||||| |||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
7360570 |
ttggagacacgaaacgtcgcgcgctatcgtagagacataacaggcgtggacacctctttccgtttcgtttcaggctggtataaaagattactgcctcctc |
7360669 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
| ||| | || |||||||| ||||||||||||||||| ||| | |||||| ||||||||| ||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
7360670 |
ggttgatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaata |
7360769 |
T |
|
| Q |
413 |
tgatgtcca |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
7360770 |
tgatctcca |
7360778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 10158196 - 10157924
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| ||||| ||| |||||| || |||||| ||||||||||| ||| | || ||| ||| |||||||||||| |||||| |
|
|
| T |
10158196 |
catgttttgtattttgagatgtactcaacacatgctagatgttgagccatgcattcctactgtcaagtattcgctcaagaatgctatggatgatggctcc |
10158097 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| |||||| || ||||||||||||||||| || | ||||| || |||||| |||| || ||||||||||||||||| | |
|
|
| T |
10158096 |
gtgagcgcgctttactttgatgtaatgttgagggcgcttgacggtatctctcctgatataactgaacttttcaatgacttttggtctcttttggagacga |
10157997 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaa |
295 |
Q |
| |
|
|| || ||||| |||||||| |||||||| || |||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
10157996 |
agaatgttgcgcgttatcgcagggagataacgggaggggactcccactttcgcttcgtttcaggctggtacaa |
10157924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 1730243 - 1729835
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1730243 |
atggacatcatatgttctgcattttgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatgga |
1730144 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
1730143 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgatttctggtctctt |
1730044 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1730043 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtataagagattactgcctcctc |
1729944 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
1729943 |
agttggtccgccgtcgattttgcaataactggcacaactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaata |
1729844 |
T |
|
| Q |
413 |
tgatgtcca |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
1729843 |
tgatctcca |
1729835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 22338586 - 22338649
Alignment:
| Q |
103 |
atgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacgg |
166 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||| ||||| |||||||||| || ||||| |
|
|
| T |
22338586 |
atgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcactcgacgg |
22338649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 14328899 - 14329307
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||||||||| |||| ||||| |
|
|
| T |
14328899 |
atggacatcacatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatgga |
14328998 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14328999 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctctt |
14329098 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
14329099 |
ttggagacacgaaacgtcgcgcgctatcgcagagacataacgggtgtggacacccgtttccgcttcgtttcaggctggtataaaagattactgcctcctc |
14329198 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
| ||| || | |||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
14329199 |
ggttgatttgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaata |
14329298 |
T |
|
| Q |
413 |
tgatgtcca |
421 |
Q |
| |
|
|||| |||| |
|
|
| T |
14329299 |
tgatctcca |
14329307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 353
Target Start/End: Original strand, 18166544 - 18166875
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || |||||||||||||| |||||| ||||||||||||||| | ||||||| | | | |||||||||||||| ||| |
|
|
| T |
18166544 |
catgttttgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggatgctggttct |
18166643 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagac-a |
221 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| ||| || |||| || ||||||||||||||||| | |
|
|
| T |
18166644 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
18166743 |
T |
|
| Q |
222 |
agaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttc |
321 |
Q |
| |
|
| ||| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||| | || |||||||| | || || |
|
|
| T |
18166744 |
aaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtctcaggctggtacaagcggttgctgcctccccagttaattt |
18166843 |
T |
|
| Q |
322 |
gccgtcgattttgcaacaactggcacaattgt |
353 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| |
|
|
| T |
18166844 |
gtcgtcgattctgcaacaactggcacaattgt |
18166875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 24954977 - 24954578
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||| |||||| ||||||||||||| ||||| |||||| ||||||| ||||||||| |||| ||||| |
|
|
| T |
24954977 |
atggacaacacatgttctgcattttgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatgga |
24954878 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24954877 |
tgctggctctgtgaccgctctgtacttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctctt |
24954778 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctc |
312 |
Q |
| |
|
|||||||| ||||||||||||| ||||| |||| |||||||| | ||||||| |||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
24954777 |
ctggagacacgaaacgtcgcgcgatatcgtcgagacataacaggcgtggacacctgtttccgcttcgtttcaggctggtataaaagattactgcctcctc |
24954678 |
T |
|
| Q |
313 |
gtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaata |
412 |
Q |
| |
|
| ||| | || |||||||| ||||||||| ||| | |||||||||||||||||||||||||||| ||||| || |||||||| ||||||| |
|
|
| T |
24954677 |
gattgatccgtcgtcgattctgcaacaac---------tgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaata |
24954587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 23195767 - 23196144
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||||||||| |||||| ||||||||||||||| | ||||||| | | | ||||||||||||| ||| |
|
|
| T |
23195767 |
catgttttgcattttgagatgcactcaattcatgctggacgttgagccatgcattcctaccgtcaagtgtttgcttaggaacactatggatgctggttct |
23195866 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
23195867 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
23195966 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||| ||| |||||| ||||||||||||| || |||||||||| ||||| || ||||||| | || |||| |
|
|
| T |
23195967 |
aaaatgttgcgcgttatcgcagggagataataggaggggactcccatttccgctttgtctcaggctggtttaagaggttgttgcctccccaattaattcg |
23196066 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctga |
400 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| | |||||| | || |||||||||||||| | |||||| ||||| |
|
|
| T |
23196067 |
tcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 23621371 - 23621749
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||||||||||| || |||||| |||||||||||||| || ||||||| | | |||||||||||||||| ||| |
|
|
| T |
23621371 |
catgttttgtattttgagatgcactcaattcatgctagatattgagccatgcattcctaccgttaaacgtttgcttaggaatgctatggatgctggttct |
23621470 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| | ||| |||||| ||| || ||| || ||||||||||||||||||| |
|
|
| T |
23621471 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgacaccgctgaactcttcattgacttttggtctcttttggagacaa |
23621570 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactg-cctcctcgtttggttc |
321 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||| || ||| || || | || ||| |
|
|
| T |
23621571 |
aaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtttcatgctggtacaagaggttgctgccccccccagttaattc |
23621670 |
T |
|
| Q |
322 |
gccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctga |
400 |
Q |
| |
|
| |||||||| ||||||||||||||||| ||| | |||||||| || |||||||||| ||| | |||||| ||||| |
|
|
| T |
23621671 |
gtcgtcgattctgcaacaactggcacaactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctga |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 400
Target Start/End: Complemental strand, 22643584 - 22643208
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || |||||||||||||| |||||| |||||||||| ||| | ||||||| | | | || ||||||||||| ||| |
|
|
| T |
22643584 |
catgttttgcattttgagatgcactcaattcatgctggatgttgagccatgcattcctattgtcaagcgtttgcttaggaacgccatggatgctggttct |
22643485 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| ||||||||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
22643484 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcatt-ttgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
22643386 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || |||| |||||||| |||| |||||| ||||| ||||||||| |||||| | ||||||||||||||| || || ||||| || |||| |
|
|
| T |
22643385 |
aaaatgttgcgcattatcgcagggagacaacaggaggggagtcccatttccacttcgtcttaggctggtacaagaggttgcttcctcccaagttaattcg |
22643286 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctga |
400 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| | |||||| | || |||||||||||||| | |||||| ||||| |
|
|
| T |
22643285 |
tcgtcgattctgcaacaactagcacaactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctga |
22643208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 22081242 - 22080833
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||| ||| |||| |||||| ||||||||||||||| ||||||| || ||| | || ||||| |
|
|
| T |
22081242 |
atggacatcatatgttttgcattttgagatgtacccaatttatgttggatattgagccatgcattcctaccgtcaaaggttttcttaagaacgccatgga |
22081143 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctctt |
212 |
Q |
| |
|
|||||| ||||||||||| || |||||||| |||||||||||||||||||| ||| ||| || |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
22081142 |
tgctggttctgtgaccgctctctacttcgacgtactgctgagggcgcttgatggtatcacacctgatactgctgaactctttcatgatttctggtctctt |
22081043 |
T |
|
| Q |
213 |
ttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttca-ggctggtacaagagattactgcctcct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
22081042 |
ttggagacaagaaacgtcgcgcgctatcgcagggagataacaggcggggatacccgtttccgcttcgtctaatggctggtacaagagattactgcctccc |
22080943 |
T |
|
| Q |
312 |
cgtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaat |
411 |
Q |
| |
|
| || | || |||||||| ||||||||||||||||| ||| | ||||||||||||| |||||||||||||| |||||||| ||||| || || |||| |
|
|
| T |
22080942 |
cagttaatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatgaacaat |
22080843 |
T |
|
| Q |
412 |
atgatgtcca |
421 |
Q |
| |
|
||||| |||| |
|
|
| T |
22080842 |
atgatctcca |
22080833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 41375346 - 41375532
Alignment:
| Q |
13 |
atggacatcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatgga |
112 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
41375346 |
atggacatcatatgttctgcattttgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatgga |
41375445 |
T |
|
| Q |
113 |
tgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
41375446 |
cgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 223 - 421
Target Start/End: Original strand, 41375531 - 41375729
Alignment:
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41375531 |
gaaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttcg |
41375630 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgaggacgagcaatatgatgtcca |
421 |
Q |
| |
|
||||||||||||||| |||||| |||| ||| || |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
41375631 |
ccgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatgatctcca |
41375729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 22799786 - 22799852
Alignment:
| Q |
103 |
atgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
169 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
22799786 |
atgctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgcttgatggtgt |
22799852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 74699 - 74369
Alignment:
| Q |
19 |
atcacatgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctgg |
118 |
Q |
| |
|
|||| |||||||||||| |||| || |||||||||||||| || |||||| ||||||||||||||| | |||||| ||| | |||||||||||||| |
|
|
| T |
74699 |
atcatatgttttgcattttgagatgcacccaattcatgctagatgttgagccatgcattcctaccgtcaagcatttgcttaagaacgctatggatgctgg |
74600 |
T |
|
| Q |
119 |
ctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggag |
218 |
Q |
| |
|
||||||||||| || ||||| |||||| || |||| || ||||||||| ||| || |||||||||| ||| || |||| || ||||||||||||||| |
|
|
| T |
74599 |
ttctgtgaccgctctttactttgatgtaatggtgagagcacttgacggtatcacacctgataccgctgaactcttcaatgagttttggtctcttttggag |
74500 |
T |
|
| Q |
219 |
acaagaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttgg |
318 |
Q |
| |
|
|| | ||| || |||||||||||||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
74499 |
acgaaaaatgttgcgcgctatcgcagggagataacaggaggggacacccgttttcgcttcgtctcaggctggtacaagaggttactgcctcccaagttaa |
74400 |
T |
|
| Q |
319 |
ttcgccgtcgattttgcaacaactggcacaa |
349 |
Q |
| |
|
| || |||||||| ||||||||||||||||| |
|
|
| T |
74399 |
tccgtcgtcgattctgcaacaactggcacaa |
74369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 39171 - 38791
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||| |||| ||||| ||||||||||||||| || ||||||| | | | |||||||||||||| ||| |
|
|
| T |
39171 |
catgttttgcattttgagatgcactcaattcatgttggatgtcgagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttct |
39072 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| |||||| |||| || ||||||||||||||||| | |
|
|
| T |
39071 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacga |
38972 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||| ||| | ||| |||||||||||||| |||||||||||||||| || || ||||| |||| || |||| |
|
|
| T |
38971 |
aaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaattcg |
38872 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
||||||||| |||||||||||||| || || | |||||| | || |||||||||||||| | |||||| |||||||| |
|
|
| T |
38871 |
ccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 32567 - 32947
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||| |||| ||||| ||||||||||||||| || ||||||| | | | |||||||||||||| ||| |
|
|
| T |
32567 |
catgttttgcattttgagatgcactcaattcatgttggatgtcgagccatgcattcctaccgtcaaacgtttgcttaggaacgctatggatgctggttct |
32666 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| |||||||||||| ||| | |||||||||| |||||| |||| || ||||||||||||||||| | |
|
|
| T |
32667 |
gtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgacttttggtctcttttggagacga |
32766 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||| ||| | ||| |||||||||||||| |||||||||||||||| || || ||||| |||| || |||| |
|
|
| T |
32767 |
aaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgctgccccctcagttaattcg |
32866 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
||||||||| |||||||||||||| || || | |||||| | || |||||||||||||| | |||||| |||||||| |
|
|
| T |
32867 |
ccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 3761 - 4138
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||||||| |||| || || ||||||||||||| |||||| |||||||||||| || | || |||| ||| | || ||||||||||| ||| |
|
|
| T |
3761 |
catgttttgcattttgagatgcacttaattcatgctggatgttgagccatgcattcctaccatcaagcgtctgcttaagaacgccatggatgctggttct |
3860 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||||||| || ||||| |||||| ||||||| ||||| ||||| ||| | |||||||||| ||| || |||| || ||||||||||||||||||| |
|
|
| T |
3861 |
gtgaccgctctttactttgatgtaatgctgagagcgctcgacggcatcactcctgataccgctgaactcttcaatgacttttggtctcttttggagacaa |
3960 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| ||||| |||||||| |||| || ||| |||||||||| || || |||||||| || || ||||| |
|
|
| T |
3961 |
aaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttctgctttgtctcatgctggtacaataggttgctgcctccccggttagttcg |
4060 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctga |
400 |
Q |
| |
|
||| |||| ||||||||||||||||| ||| | |||||| | ||||||||||||||||| | |||||| ||||| |
|
|
| T |
4061 |
tcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctga |
4138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 65 - 403
Target Start/End: Complemental strand, 36203 - 35865
Alignment:
| Q |
65 |
tgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgac |
164 |
Q |
| |
|
|||||| ||||||||||| ||| || ||||||| | | |||||||||| ||||| || || | ||| || ||||| |||||| ||||||||||||||||| |
|
|
| T |
36203 |
tgagccatgcattcctactgtcaaacgtttgcttaggaatgctatggacgctggttccgtaaacgctctttactttgatgtaatgctgagggcgcttgac |
36104 |
T |
|
| Q |
165 |
ggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggaca |
264 |
Q |
| |
|
||| ||| | ||||| | || ||| || |||| |||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||| |
|
|
| T |
36103 |
ggtatcactcctgatatcactgaactcttcaatgacttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacaggaggggact |
36004 |
T |
|
| Q |
265 |
cccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatgg |
364 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| || ||||| || | || |||| || ||||| ||||||||||||||||| || || ||||| |
|
|
| T |
36003 |
cccactttcgcttcgtttcaggctggtacaagaggttgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgg |
35904 |
T |
|
| Q |
365 |
attgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
35903 |
gctgagacgcaactatcgagggtttcatcctgctgagga |
35865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 14562148 - 14562533
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| ||||| ||| ||||||||| |||||| ||||||||||||||| | ||||||| | | |||||||||| ||||||||| |
|
|
| T |
14562148 |
catgttttgtattttgagatgtactcaacacatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctct |
14562247 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| |||||| ||||||||||| |||||||| ||| | |||| || || |||||| |||| || ||||||||||||||||| | |
|
|
| T |
14562248 |
gtgagcgctctttactttgatgtaatgctgagggcgattgacggtatcactcctgatgccactgaacttttcaatgacttttggtctcttttggagacga |
14562347 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactg-----cctcctcgtttg |
317 |
Q |
| |
|
||| || ||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| || || ||| || || | || |
|
|
| T |
14562348 |
aaaatgttgcgcgttatcgcagggagataataggaggggattcccatttccgcttcgtttcaggctggtacaaaaggttgctgccccccccccccagtta |
14562447 |
T |
|
| Q |
318 |
gttcgccgtcgattttgcaacaactggcacaattgttacagggatggattgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || | |||||| | || |||||||||||||| | |||||| |||||||| |
|
|
| T |
14562448 |
attcgccgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 403
Target Start/End: Original strand, 13284332 - 13284670
Alignment:
| Q |
65 |
tgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgac |
164 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| | | | |||||||| ||||||||||||| ||| || ||||| |||||| ||||||||||||||||| |
|
|
| T |
13284332 |
tgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgcttgac |
13284431 |
T |
|
| Q |
165 |
ggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggaca |
264 |
Q |
| |
|
||| ||| | ||||||| || ||| || |||| || ||||||||||||||||| | || || || || |||||||| |||||||| || |||||| |
|
|
| T |
13284432 |
ggtatcactcctgataccactgaactcttcaatgacttttggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggaggggact |
13284531 |
T |
|
| Q |
265 |
cccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatgg |
364 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| || ||||| || || |||| || ||||| ||||||||||||||||| || | ||||| |
|
|
| T |
13284532 |
cctattttcgcttcgtttcaggctggtacaagaggttgctgcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgg |
13284631 |
T |
|
| Q |
365 |
attgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| |
|
|
| T |
13284632 |
gttgagacgcaactatcgaggaattcatcctgctgagga |
13284670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 14741960 - 14742024
Alignment:
| Q |
105 |
gctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
169 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
14741960 |
gctatggatgctggctctgtgagcgcgctctactttgatgtcatgctgagggcgcttgatggtgt |
14742024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 28880 - 28605
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||||||||||| || |||||| ||||||||||||||| | ||||||| | | | |||||||| ||||||||| |
|
|
| T |
28880 |
catgttttgtattttgagatgcactcaattcatgctagatgttgagccatgcattcctaccgtcaagcgtttgcttaggaacgctatggacgctggctct |
28781 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|| | ||| || ||||| |||||| |||||||||||||||||||| ||| | ||||||| || ||| || ||| || ||||||||||||||||| | |
|
|
| T |
28780 |
gtaagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcatgataccactgaactcttcattgacttttggtctcttttggagacga |
28681 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagag |
298 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
28680 |
aaaatgttgcgcgttatcgcagggagataacaggaggggactcccattttcgcttcgtttcaggctggtacaagag |
28605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 19663 - 19338
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| ||||| ||| ||| ||||| |||||| ||||||| ||||||| | ||||||| | |||||||||| ||||||||| |
|
|
| T |
19663 |
catgttttgtattttgagatgtactcaacacattctggatgttgagccatgcattcgtaccgtcaagcgtttgcttagaaatgctatggacgctggctct |
19564 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| |||||| | |||| |||| |||||||| ||| | |||| || || |||||| |||| || ||||||||||||||||||| |
|
|
| T |
19563 |
gtgagcgctctttactttgatgtaattctgatggcgattgacggtatcactcctgatgccactgaacttttcaatgacttttggtctcttttggagacaa |
19464 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||| || ||||| || | || |||| |
|
|
| T |
19463 |
aaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttccacttcgtttcaggctggtacaagaggttgctgcc-ccccagttaattcg |
19365 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaa |
349 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
19364 |
tcgtcgattctgcaacaactggcacaa |
19338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 13823 - 13680
Alignment:
| Q |
24 |
atgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctctg |
123 |
Q |
| |
|
|||||||| ||| |||| ||||| ||| ||||||||| |||||| ||||||||||||||| | ||||||| | | |||||||||| |||||||||| |
|
|
| T |
13823 |
atgttttgtattttgagatgtactcaacacatgctggatgttgagccatgcattcctaccgtcaagcgtttgcttaggaatgctatggacgctggctctg |
13724 |
T |
|
| Q |
124 |
tgaccgccctgtacttcgatgtactgctgagggcgcttgacggt |
167 |
Q |
| |
|
||| ||| || ||||| |||||| ||||||||||| |||||||| |
|
|
| T |
13723 |
tgagcgctctttactttgatgtaatgctgagggcgattgacggt |
13680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 12198 - 12523
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||| ||||||||| |||||| |||||||||||| || | |||| || | | |||||||||| ||||||||| |
|
|
| T |
12198 |
catgttttgtattttgagatgcactcaacacatgctggatgttgagccatgcattcctaccatcaagcgttttcttaggaatgctatggacgctggctct |
12297 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| ||||| |||||||||||||||||| | ||| | ||||||| || |||||| |||| || ||||||||||||||||||| |
|
|
| T |
12298 |
gtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgacttttggtctcttttggagacaa |
12397 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| || || |||||||| |||| |||| ||||||||||||||| || ||||| ||| | || |||| |
|
|
| T |
12398 |
aaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggttgctgccccctag-ttaattcg |
12496 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaa |
349 |
Q |
| |
|
|||||||| || |||||||||||||| |
|
|
| T |
12497 |
tcgtcgattctgaaacaactggcacaa |
12523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 23 - 349
Target Start/End: Original strand, 17949 - 18274
Alignment:
| Q |
23 |
catgttttgcattctgaggtgtacccaattcatgctggaccctgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctct |
122 |
Q |
| |
|
||||||||| ||| |||| || || ||| ||||||||| |||||| |||||||||||| || | |||| || | | |||||||||| ||||||||| |
|
|
| T |
17949 |
catgttttgtattttgagatgcactcaacacatgctggatgttgagccatgcattcctaccatcaagcgttttcttaggaatgctatggacgctggctct |
18048 |
T |
|
| Q |
123 |
gtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaa |
222 |
Q |
| |
|
|||| ||| || ||||| ||||| |||||||||||||||||| | ||| | ||||||| || |||||| |||| || ||||||||||||||||||| |
|
|
| T |
18049 |
gtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgacttttggtctcttttggagacaa |
18148 |
T |
|
| Q |
223 |
gaaacgtcgcgcgctatcgcagagagataacaggtggggacacccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcg |
322 |
Q |
| |
|
||| || ||||| |||||||| ||||||||||| || || |||||||| |||| |||| ||||||||||||||| || ||||| ||| | || |||| |
|
|
| T |
18149 |
aaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggttgctgccccctag-ttaattcg |
18247 |
T |
|
| Q |
323 |
ccgtcgattttgcaacaactggcacaa |
349 |
Q |
| |
|
|||||||| || |||||||||||||| |
|
|
| T |
18248 |
tcgtcgattctgaaacaactggcacaa |
18274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 403
Target Start/End: Original strand, 19030131 - 19030469
Alignment:
| Q |
65 |
tgagccctgcattcctaccgtccaaggtttgctgaagcatgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgac |
164 |
Q |
| |
|
|||||| ||||||||||||||| | |||| || | | ||| ||||||||||||||||| || ||| || || || |||||| |||||||||| |||||| |
|
|
| T |
19030131 |
tgagccatgcattcctaccgtcaagcgttttcttaggaatgttatggatgctggctctgcgagcgcactctattttgatgtaatgctgagggcacttgac |
19030230 |
T |
|
| Q |
165 |
ggtgtcagacttgataccgctacactttttcatgatttctggtctcttttggagacaagaaacgtcgcgcgctatcgcagagagataacaggtggggaca |
264 |
Q |
| |
|
|| | | | |||| || || ||| || |||| || |||||||||||| || | | || || | ||| |||||||| || ||||| || ||||| |
|
|
| T |
19030231 |
ggcattactcctgatgccactgaactcttcaatgacttttggtctcttttgaagtcgcggaatgttgtgcgttatcgcagggaaataacgggaggggatt |
19030330 |
T |
|
| Q |
265 |
cccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcgccgtcgattttgcaacaactggcacaattgttacagggatgg |
364 |
Q |
| |
|
|||| || |||||||||| ||||||||| ||||| || ||||| | | || |||| |||||||| ||||||||||||||||| || | ||||| |
|
|
| T |
19030331 |
cccactttcgcttcgttttaggctggtataagaggttgctgcccctccagttaattcgtcgtcgattctgcaacaactggcacaactgccctggagatgg |
19030430 |
T |
|
| Q |
365 |
attgagacgcaactatcgaggttatcatcccgctgagga |
403 |
Q |
| |
|
| ||||||||||||||||| | |||||| |||||||| |
|
|
| T |
19030431 |
gctaagacgcaactatcgagggtttcatcctgctgagga |
19030469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0282 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0282
Description:
Target: scaffold0282; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 2149 - 2215
Alignment:
| Q |
103 |
atgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagggcgcttgacggtgt |
169 |
Q |
| |
|
|||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
2149 |
atgctatggatgctggctctgtgagcgtgctctactttgatgtcatgctgagggcgcttgatggtgt |
2215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 9177 - 9096
Alignment:
| Q |
264 |
acccatttccgcttcgtttcaggctggtacaagagattactgcctcctcgtttggttcgccgtcgattttgcaacaactggc |
345 |
Q |
| |
|
||||| || ||||||||||||||| |||| ||||| || ||||||||| ||| |||| || ||||| ||||||||||||| |
|
|
| T |
9177 |
acccactttcgcttcgtttcaggccggtataagagtttgttgcctcctcagttgattcgtcgccgattctgcaacaactggc |
9096 |
T |
|
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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 121771 - 121823
Alignment:
| Q |
103 |
atgctatggatgctggctctgtgaccgccctgtacttcgatgtactgctgagg |
155 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || || ||||| ||||||||| |
|
|
| T |
121771 |
atgctatggatgctggctctgtgagcgcgctctattttgatgtcctgctgagg |
121823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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