View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_443 (Length: 239)

Name: NF11737A_low_443
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_443
NF11737A_low_443
[»] chr5 (3 HSPs)
chr5 (19-170)||(32472920-32473071)
chr5 (165-226)||(9671164-9671225)
chr5 (165-226)||(13373971-13374032)
[»] chr8 (2 HSPs)
chr8 (165-226)||(359115-359176)
chr8 (165-226)||(21143822-21143883)
[»] chr6 (4 HSPs)
chr6 (165-226)||(843322-843383)
chr6 (173-226)||(12600101-12600153)
chr6 (177-225)||(7800044-7800092)
chr6 (177-225)||(19401927-19401975)
[»] chr4 (7 HSPs)
chr4 (165-226)||(4907263-4907324)
chr4 (165-226)||(29756468-29756529)
chr4 (165-226)||(55019163-55019224)
chr4 (165-226)||(4933132-4933193)
chr4 (165-226)||(35785367-35785428)
chr4 (173-226)||(38158432-38158485)
chr4 (165-226)||(7108248-7108309)
[»] chr2 (4 HSPs)
chr2 (165-226)||(44819973-44820034)
chr2 (165-226)||(40128721-40128782)
chr2 (165-226)||(10344942-10345002)
chr2 (165-226)||(43516602-43516663)
[»] chr1 (3 HSPs)
chr1 (165-226)||(26734624-26734685)
chr1 (165-226)||(42300657-42300718)
chr1 (173-226)||(52793908-52793961)
[»] scaffold0060 (1 HSPs)
scaffold0060 (165-226)||(13042-13103)
[»] chr3 (4 HSPs)
chr3 (165-226)||(31199452-31199513)
chr3 (167-226)||(24612473-24612532)
chr3 (177-226)||(24613418-24613467)
chr3 (165-226)||(27329028-27329089)
[»] chr7 (2 HSPs)
chr7 (165-226)||(41591719-41591780)
chr7 (165-231)||(41385601-41385667)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 32473071 - 32472920
Alignment:
Q  19 acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32473071 acaatctaccccaacacaccttccatcatctacaacgacaccgttttcacatggtctcaaacccacaaacgatgcctccaacttgcctccgccatcacct 32472972  T
Q  119 ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccc 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32472971 ccttaggtatccgccgcggcaacgtcgtctccgtcatcgctcccaacatccc 32472920  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 9671225 - 9671164
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9671225 catccctgtgtcaatttacgtttttgattttagtccttgtattttaacaacttatcatctct 9671164  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 13374032 - 13373971
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||    
T  13374032 catccctgtgtcaatttacgttttttattttagtccctgtattttaacaacttatcatctct 13373971  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 359115 - 359176
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  359115 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 359176  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 21143822 - 21143883
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  21143822 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 21143883  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 843322 - 843383
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  843322 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 843383  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 12600153 - 12600101
Alignment:
Q  173 tgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  12600153 tgtcaatttacgtttttgattttagtccatgta-tttaacaacttatcatctct 12600101  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 7800044 - 7800092
Alignment:
Q  177 aatttaagtttttgattttagtccttgtattttaacaacttatcatctc 225  Q
    |||||| ||||||||||||||||| |||||||  |||||| ||||||||    
T  7800044 aatttacgtttttgattttagtccctgtatttatacaactaatcatctc 7800092  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 19401927 - 19401975
Alignment:
Q  177 aatttaagtttttgattttagtccttgtattttaacaacttatcatctc 225  Q
    |||||| ||||||||||||||||| |||||||  |||||| ||||||||    
T  19401927 aatttacgtttttgattttagtccctgtatttacacaactaatcatctc 19401975  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 4907263 - 4907324
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  4907263 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 4907324  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 29756529 - 29756468
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  29756529 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 29756468  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 55019163 - 55019224
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  55019163 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 55019224  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 4933132 - 4933193
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  4933132 catccctgtgtcaatttacgattttgattttagtccctgtattttaacaacttatcatctct 4933193  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 35785428 - 35785367
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  35785428 catccctgtgtcaatttacgtttttgattttagtccctgtattttaaaaacttatcatctct 35785367  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 38158432 - 38158485
Alignment:
Q  173 tgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38158432 tgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 38158485  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 7108248 - 7108309
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| ||||||  || |||||| |||||||||| |||||||||||||||||||||||||    
T  7108248 catccctgtgtcaacgtacgttttttattttagtccctgtattttaacaacttatcatctct 7108309  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 44820034 - 44819973
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  44820034 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 44819973  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 40128721 - 40128782
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||    
T  40128721 catccctgtgtcaatttacgtttttgattttagtccctgtgttttaacaacttatcatctct 40128782  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 10344942 - 10345002
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||||    
T  10344942 catccctgtgtcaatttacgttttttattttagtcc-tgtattttaacaacttatcatctct 10345002  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 43516663 - 43516602
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| |||||| |||||||||| |||||| ||||||||||||||||||    
T  43516663 catccctgtgtcaatttacgttttttattttagtccctgtattctaacaacttatcatctct 43516602  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 26734685 - 26734624
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  26734685 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 26734624  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 42300718 - 42300657
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  42300718 catccctgtgtcaatttacgtttttgattttagtccctgtattttaacaacttatcatctct 42300657  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 52793961 - 52793908
Alignment:
Q  173 tgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  52793961 tgtcaatttacgtttttgattttagtccctgtaatttaacaacttatcatctct 52793908  T

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Target: scaffold0060 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 13042 - 13103
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  13042 catccctgtgtcaatttacgtttttgattttagtccctatattttaacaacttatcatctct 13103  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 31199513 - 31199452
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  31199513 catccctgtgtcaatttacgtttttgattttagtccctgtattctaacaacttatcatctct 31199452  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 24612532 - 24612473
Alignment:
Q  167 tccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  24612532 tccctgtgtcaatttacgtttttgattttagtccctatattttaacaacttatcatctct 24612473  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 24613418 - 24613467
Alignment:
Q  177 aatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    |||||| ||||||||||||||||||||| |||  |||||| |||||||||    
T  24613418 aatttacgtttttgattttagtccttgtctttacacaactaatcatctct 24613467  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 27329089 - 27329028
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||   || |||||||||||||    
T  27329089 catccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctct 27329028  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 41591780 - 41591719
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctct 226  Q
    ||||||| |||||||||| ||||||||||||||||| ||| || ||||||||||||||||||    
T  41591780 catccctgtgtcaatttacgtttttgattttagtccctgtgttctaacaacttatcatctct 41591719  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 41385601 - 41385667
Alignment:
Q  165 catccctatgtcaatttaagtttttgattttagtccttgtattttaacaacttatcatctctgatgt 231  Q
    ||||||| |||||||||| |||||| ||||||||||| ||| | | |||||||||||||||| ||||    
T  41385601 catccctgtgtcaatttatgttttttattttagtcctagtactctcacaacttatcatctctcatgt 41385667  T

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