View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_452 (Length: 238)

Name: NF11737A_low_452
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_452
NF11737A_low_452
[»] chr5 (9 HSPs)
chr5 (9-232)||(26099226-26099449)
chr5 (174-223)||(25224814-25224863)
chr5 (174-223)||(25288970-25289019)
chr5 (30-118)||(25224928-25225016)
chr5 (30-118)||(25289084-25289172)
chr5 (30-118)||(25728232-25728320)
chr5 (174-223)||(25728385-25728434)
chr5 (36-109)||(25222582-25222655)
chr5 (36-109)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (30-118)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 26099226 - 26099449
Alignment:
Q  9 tgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgc 108  Q
    ||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26099226 tgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgc 26099325  T
Q  109 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||     
T  26099326 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtag 26099425  T
Q  209 cttcggaatcttgactgaggctcc 232  Q
    ||||||||||||||||||||||||    
T  26099426 cttcggaatcttgactgaggctcc 26099449  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
Q  174 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 223  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25224863 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25224814  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
Q  174 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 223  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25289019 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25288970  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
Q  30 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 118  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25225016 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25224928  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
Q  30 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 118  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25289172 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25289084  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
Q  30 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 118  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25728232 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25728320  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
Q  174 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 223  Q
    |||||| |||||||||||||||||||||| || ||||| |||||||||||    
T  25728385 tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac 25728434  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
Q  36 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 109  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25222582 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25222655  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
Q  36 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 109  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25286738 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25286811  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
Q  30 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 118  Q
    ||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| ||||  ||||||||||| | ||||||    
T  25618132 gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga 25618044  T

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