View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_454 (Length: 237)

Name: NF11737A_low_454

Description: NF11737A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11737A_low_454

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 174; E-Value: 9e-94

Query Start/End: Original strand, 24 - 219

Target Start/End: Original strand, 38483684 - 38483881

Alignment:

Q	24	tatttttggagtaagaggtgttttgagaaattgaa-tggcctattgatatcgggagtagttttttcgatggaaatcgtgttgggaagacaggttttgttg	122	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	38483684	tatttttggagtaagaggtgttttgagaaattgaaatggcctattgatattgggagtagttttttcgatggaaatcgtgttgggaagacgggttttgttg	38483783	T

Q	123	aacggaggtcgttttggaatttg-ttaggagttttgataggctttgggtgatgttgattttgtttcttcaagtggcgattattgttggttggaatgat	219	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38483784	aacggaggtcgttttggaatttgtttaggagttttgataggctttgggtgatgttgattttgtttcttcaagtggcgattattgttggttggaatgat	38483881	T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 100 - 193

Target Start/End: Original strand, 30118163 - 30118257

Alignment:

Q	100	tgttgggaagacaggttttgttgaacggaggtcgttttggaatttgtta-ggagttttgataggctttgggtgatgttgattttgtttcttcaag	193	Q
		\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	30118163	tgttggtaagaccggatttgttgagcagagatcgttttggaatctgtttcggagttttgacaggctttggattatgttggtgttgtttcttcaag	30118257	T

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