View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_458 (Length: 237)
Name: NF11737A_low_458
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_458 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 49297384 - 49297199
Alignment:
| Q |
20 |
aaatacaactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttgaaaa |
119 |
Q |
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| T |
49297384 |
aaatacaactcaaagttaatgctgagaaggatgcaaaataatgatatggttttgaaaaggataactagaccatcacaaactagcaagttatacttga--- |
49297288 |
T |
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| Q |
120 |
ttaaaggaaaggcccgtatagctcatatcaggagcctggatgctggataatttaagcagagaacttctactcagattatagtaaaacatat |
210 |
Q |
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| T |
49297287 |
--aaaggaaaggcccgtatagctcatatcaggagcctagatgctggataatttaagcagagaacttttactcagattatagtaaaacatat |
49297199 |
T |
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