View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_46 (Length: 434)
Name: NF11737A_low_46
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 201 - 434
Target Start/End: Original strand, 6182587 - 6182820
Alignment:
| Q |
201 |
atatagatctatgcctcttcagaatgaagaagtcccaagagtcttgaccgatgttggccgttgacgccattatagggctaaactccctattcacaacggt |
300 |
Q |
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| T |
6182587 |
atatagatctatgcctcatcagaatgaagaagtcccaagagtcttgaccgatgttggccgttgacgccattatagggctaaactccctattcacaacggt |
6182686 |
T |
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| Q |
301 |
aactttcatcggcttaggatggacccaaaacgatccatccaacgacgtcaatgccgacccaaaatgcatctctaacacttctgcagcaacatgtcttgtc |
400 |
Q |
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| T |
6182687 |
aactttcattggcttaggatggacccaaaacgatccatccaacaacgtcaatgccgacccaaaatgtatctctaacacttctgcagcaacatgtcttgtc |
6182786 |
T |
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| Q |
401 |
atcttcaatgggttcttgtttggatactttttga |
434 |
Q |
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| T |
6182787 |
atcttcaatgggttcttgtttggatactttttga |
6182820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 42099547 - 42099339
Alignment:
| Q |
8 |
gatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaatgaagcctggtccgaagaggaagcaataacaaattcaatgt |
107 |
Q |
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| T |
42099547 |
gatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaatgaagcctggtccgaagaggaaacaataacaaattcaatga |
42099448 |
T |
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| Q |
108 |
tattaataattcaactgtttgtgtgaaaatggattagtttccatgtattgcttgaagtaaaatttaagg------tatatatattgtgacagtgatcata |
201 |
Q |
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| T |
42099447 |
tattaataattcaactgtttgtgtgaaaatggattagtttccatggattgcttgaagtaaaatttaaggtataggtatatatattgggacagtgatcata |
42099348 |
T |
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| Q |
202 |
tatagatct |
210 |
Q |
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| T |
42099347 |
tattgatct |
42099339 |
T |
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