View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_461 (Length: 237)
Name: NF11737A_low_461
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_461 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: scaffold0057 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 41856 - 42012
Alignment:
| Q |
53 |
tggcggaggagagagtgtgagggaatgagacttgactttctttccttttcagttttaatttttattctcaaatggaacatttattatttattaatgccaa |
152 |
Q |
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| T |
41856 |
tggcggaggagagagtgtgaaggaatgagatttgactttctttccttttcatttttaatttttattctcaaatggaacatttattatttattaatgtcaa |
41955 |
T |
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| Q |
153 |
atgtgtgccacataggagatatatagaggggtttgtcatgtatgtatcacctcttgt |
209 |
Q |
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| T |
41956 |
atgtgtgccacataggggatgtatagaggggtttgtcatgtatgtatcacctcttgt |
42012 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 8725678 - 8725585
Alignment:
| Q |
53 |
tggcggaggagagagtgtgagggaatgagacttgactttctttccttttcagttttaatttttattctcaaatggaacatttattatttattaat |
147 |
Q |
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| T |
8725678 |
tggcggaggagagagcatgagggaa-gaaccgagacattctttccttttcatttttttttttaattctcaaatggaacatttattatttattaat |
8725585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 31698881 - 31698976
Alignment:
| Q |
93 |
tttccttttcagttttaattttt--attctcaaatggaacatttattatttattaatgccaaatgtgtgccacataggagatatatagaggggtttg |
187 |
Q |
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| T |
31698881 |
tttccttttcatttttttttttttaattctcaaa-ggaacatttattatttgttaatgccaaatatttgccacatagggggtgtatagaggggtttg |
31698976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 42838795 - 42838833
Alignment:
| Q |
128 |
aacatttattatttattaatgccaaatgtgtgccacata |
166 |
Q |
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| T |
42838795 |
aacatttattatttattaatgttaaatgtgtgccacata |
42838833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 7237183 - 7237124
Alignment:
| Q |
128 |
aacatttattatttattaatgccaaatgtgtgccacataggagatatatagaggggtttg |
187 |
Q |
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| T |
7237183 |
aacatttattatttattaatgtcaaatgtgtaccacataagggatgtatagagaggtttg |
7237124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 34278874 - 34278816
Alignment:
| Q |
128 |
aacatttattatttattaatgccaaatgtgtgccacataggagatatatagaggggtttg |
187 |
Q |
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| T |
34278874 |
aacatttattatttattaatgcaaaatatttgccacatagg-gatgtatagaggggtttg |
34278816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 34279058 - 34279006
Alignment:
| Q |
93 |
tttccttttcagttttaatttttattctcaaatggaacatttattatttattaa |
146 |
Q |
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| T |
34279058 |
tttccttttcatttttt-ttttaattctcaaatggaacatttattatttattaa |
34279006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 22502547 - 22502585
Alignment:
| Q |
128 |
aacatttattatttattaatgccaaatgtgtgccacata |
166 |
Q |
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| T |
22502547 |
aacatttattatttattaatgttaaatgtgtgccacata |
22502585 |
T |
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