View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_463 (Length: 236)
Name: NF11737A_low_463
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_463 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 34926142 - 34925930
Alignment:
| Q |
15 |
tcactttttaatataataatttatctctaaaccagaagaagaccagggaagagttctcgtatgagagtatgcgaaaggatgtcaaataccatgccaggac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34926142 |
tcactttttaatataataatttatctctaaaccagaagaagaccagggaagagttctcgtatgagagtatgcgaaaggatgttaaataccatgccaggac |
34926043 |
T |
|
| Q |
115 |
taagtctgaattacaatcccatgtaagttttgtctttctcgagatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34926042 |
taagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtc |
34925943 |
T |
|
| Q |
215 |
ctttaatattatt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34925942 |
ctttaatattatt |
34925930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 34930582 - 34930370
Alignment:
| Q |
15 |
tcactttttaatataataatttatctctaaaccagaagaagaccagggaagagttctcgtatgagagtatgcgaaaggatgtcaaataccatgccaggac |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34930582 |
tcactttttaatataattatttatctctaaaccagaagaagaccagggaagagttctcatatgagagtatgcgaaaggatgtcaaataccatgccaggac |
34930483 |
T |
|
| Q |
115 |
taagtctgaattacaatcccatgtaagttttgtctttctcgagatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34930482 |
taagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtc |
34930383 |
T |
|
| Q |
215 |
ctttaatattatt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34930382 |
ctttaatattatt |
34930370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 34936098 - 34935886
Alignment:
| Q |
15 |
tcactttttaatataataatttatctctaaaccagaagaagaccagggaagagttctcgtatgagagtatgcgaaaggatgtcaaataccatgccaggac |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34936098 |
tcaccttttaatataataatttatctctaaaccagaagaagaccatggaagagttctcgtttgagagtatgcgaaaggatgtcaaataccatgccaggac |
34935999 |
T |
|
| Q |
115 |
taagtctgaattacaatcccatgtaagttttgtctttctcgagatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34935998 |
taagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataattttagtttcagtc |
34935899 |
T |
|
| Q |
215 |
ctttaatattatt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34935898 |
ctttaatattatt |
34935886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University