View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_465 (Length: 235)
Name: NF11737A_low_465
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_465 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 48047325 - 48047418
Alignment:
| Q |
19 |
agttagtatatcacaattcacaactctcaatttgaagattacacgatgatgaggttggttatcagtcttctccaatttcattttcctcactata |
112 |
Q |
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| T |
48047325 |
agttagtatatcacaattcacaactctcaatttgaagattacacgatgatgaggttggttatcagtcttctccaatttcattttcctcactata |
48047418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 48047481 - 48047530
Alignment:
| Q |
172 |
aatataccaacattttcatctcaatatgcaattccaccttcatatttttc |
221 |
Q |
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| T |
48047481 |
aatataccaacattttcatctcaatatgcaattccaccttcatatttttc |
48047530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 48039158 - 48039186
Alignment:
| Q |
177 |
accaacattttcatctcaatatgcaattc |
205 |
Q |
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| T |
48039158 |
accaacattttcatctcaatatgcaattc |
48039186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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