View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_471 (Length: 233)
Name: NF11737A_low_471
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_471 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 16974763 - 16974945
Alignment:
| Q |
16 |
acatcatgctgtgtattagacatatcaaacgtttcaaccgcatcaggatgctctttaccggataactcgggattgcttaaattgtgaaatggaactccga |
115 |
Q |
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| T |
16974763 |
acatcatgctgtgtattagacatatcaaacgtttcaaccgcatcaggatgctctttaccggataactcgggattgcttaaattgtgaaatggaactccga |
16974862 |
T |
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| Q |
116 |
tgtcccatttcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataattggcaagcatttgggaaaggct |
198 |
Q |
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| T |
16974863 |
tgtcccatttcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataattggcaagcatttgggaaaggct |
16974945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 10603796 - 10603623
Alignment:
| Q |
25 |
tgtgtattagacatatcaaacgtttcaaccgcatcaggatgctctttaccggataactcgggattgcttaaattgtgaaatggaactccgatgtcccatt |
124 |
Q |
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| T |
10603796 |
tgtgtattggacctatcaaacgtttcaaccgcatcagcatgctctttaccagataactcgggattgcttaaattgtgaaatggaactccaatgtcccatt |
10603697 |
T |
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| Q |
125 |
tcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataattggcaagcatttgggaaaggct |
198 |
Q |
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| T |
10603696 |
tcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataatcggcaagcatttgggaaaggct |
10603623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 16821859 - 16822004
Alignment:
| Q |
49 |
tcaaccgcatcaggatgctctttaccggataactcgggattgcttaaattgtgaaatggaactccgatgtcccatttcttgaattcatcctcccaagtta |
148 |
Q |
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| T |
16821859 |
tcaacagcatcatcatgctctttaccggataatttgagattgttcaaattgtgaaatggaactccaatgtcccattttttgaactcatcttcccaagtaa |
16821958 |
T |
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| Q |
149 |
gtagtatactagcaggagcgacaataattggcaagcatttgggaaa |
194 |
Q |
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| T |
16821959 |
gtaacaaactcgcaggagcaacaataaccggcaagcatttaggaaa |
16822004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 16965933 - 16966064
Alignment:
| Q |
63 |
atgctctttaccggataactcgggattgcttaaattgtgaaatggaactccgatgtcccatttcttgaattcatcctcccaagttagtagtatactagca |
162 |
Q |
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| T |
16965933 |
atgctctttaccggataactcaagattgttcaaattgtgaaatggaactccaacgtcccattttttgaactcatcttcccaagtaagtaacaaactcgca |
16966032 |
T |
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| Q |
163 |
ggagcgacaataattggcaagcatttgggaaa |
194 |
Q |
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| T |
16966033 |
ggtgcaacaataacgggcaagcatttaggaaa |
16966064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 35265308 - 35265131
Alignment:
| Q |
21 |
atgctgtgtattagacatatcaaacgtttcaaccgcatcaggatgctctttaccggataactcgggattgcttaaattgtgaaatggaactccgatgtcc |
120 |
Q |
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| T |
35265308 |
atgccgtgcattagacatatcaaatgtttcaaccgcatcaggatgctctttaccagataactcgggattgtttaaattgtgaaatggaactccgatgtcc |
35265209 |
T |
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| Q |
121 |
catttcttgaattcatcctcccaagttagtagtatactagcaggagcgacaataattggcaagcatttgggaaaggct |
198 |
Q |
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| T |
35265208 |
aatttcttgaattcatcctcccaagttagtagtatactagcaggagcaacaataatcggcaagcatttgggaaaggct |
35265131 |
T |
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