View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_472 (Length: 233)
Name: NF11737A_low_472
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_472 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 11860330 - 11860131
Alignment:
| Q |
20 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11860330 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttatcaca |
11860231 |
T |
|
| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacaccaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11860230 |
agttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagtttctttgctttctgaaacaccaaa |
11860131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 11828195 - 11827999
Alignment:
| Q |
20 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
119 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11828195 |
acttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagtacttgaaggtgtcgaagatcttatcaca |
11828096 |
T |
|
| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacacc |
216 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11828095 |
agttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctgtctgaaacacc |
11827999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 11902227 - 11902410
Alignment:
| Q |
20 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
119 |
Q |
| |
|
||||||| ||||||||||| | |||||| |||| |||||||| ||||||||||||| ||| ||||| || ||||||||||| ||||||||| || || |
|
|
| T |
11902227 |
acttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtaggga---cttgaaggtgttgaagatcttatcgca |
11902323 |
T |
|
| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgcttt |
206 |
Q |
| |
|
||||||||||||| ||| ||||| || ||||| ||||||||||| || |||| |||||||||||||| || |||||||||||||| |
|
|
| T |
11902324 |
tgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagtttctttgcttt |
11902410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 12039095 - 12038903
Alignment:
| Q |
20 |
acttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcaca |
119 |
Q |
| |
|
||||||| || |||||||||||||||| ||||||||||||||| ||||| | ||| |||||||| | ||| |||||||||| |||||||| ||||| |
|
|
| T |
12039095 |
acttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcat--agct-ttgaaggtgttaaagatcttatcaca |
12038999 |
T |
|
| Q |
120 |
agttgatgttgtcacctttacctcatgcggaagctgagggttgttaatgttgtatggcaaaagaatggtccttagtttctttgctttctgaaacac |
215 |
Q |
| |
|
||||||||||||| || |||||| | |||||| ||||||||| | ||||||||||||||||||||||||| ||||| || ||||||| |||||| |
|
|
| T |
12038998 |
ggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagttttttagctttctcaaacac |
12038903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 11731967 - 11731791
Alignment:
| Q |
28 |
tcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcacttgaaggtgtcgaagatcttttcacaagttgatg |
127 |
Q |
| |
|
|||||||||||| | || || ||||||||||||| |||||||||||||||||| | | || ||||||||||| ||||||||| ||||| |||| | |
|
|
| T |
11731967 |
tcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcatgga---cttgaaggtgttgaagatcttatcacaggttggcg |
11731871 |
T |
|
| Q |
128 |
ttgtcacctttacctcatgcggaagctgagggttgttaatg---ttgtatggcaaaagaatggtccttagtttctttgct |
204 |
Q |
| |
|
| |||| ||| ||||| || |||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
11731870 |
tcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatggtcctcagtttctttgct |
11731791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University