View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_473 (Length: 233)

Name: NF11737A_low_473
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_473
NF11737A_low_473
[»] scaffold0387 (1 HSPs)
scaffold0387 (12-203)||(3996-4187)
[»] chr2 (3 HSPs)
chr2 (12-203)||(21761863-21762054)
chr2 (12-124)||(22948186-22948298)
chr2 (12-124)||(12382448-12382560)
[»] chr3 (6 HSPs)
chr3 (12-233)||(15594298-15594519)
chr3 (22-233)||(15917167-15917378)
chr3 (12-130)||(20441871-20441989)
chr3 (12-130)||(41438997-41439115)
chr3 (10-124)||(5952192-5952306)
chr3 (22-124)||(46379096-46379198)
[»] chr7 (5 HSPs)
chr7 (15-142)||(799748-799875)
chr7 (12-130)||(16288608-16288726)
chr7 (12-124)||(16394680-16394792)
chr7 (22-124)||(30371187-30371289)
chr7 (12-124)||(9468375-9468487)
[»] scaffold0094 (1 HSPs)
scaffold0094 (12-190)||(36592-36770)
[»] chr5 (7 HSPs)
chr5 (12-130)||(34467418-34467536)
chr5 (12-124)||(17955895-17956007)
chr5 (12-124)||(5441468-5441580)
chr5 (12-124)||(36377213-36377325)
chr5 (12-124)||(37001867-37001979)
chr5 (12-124)||(31519100-31519212)
chr5 (12-123)||(15785970-15786081)
[»] scaffold0029 (1 HSPs)
scaffold0029 (12-122)||(27973-28083)
[»] chr6 (1 HSPs)
chr6 (12-124)||(9137654-9137766)
[»] chr1 (1 HSPs)
chr1 (12-123)||(5630346-5630457)


Alignment Details
Target: scaffold0387 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 3996 - 4187
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  3996 acatctacagcaacccaattgtggctagaccctccttgtgtcacaaagcttcgtgacactccttccggatcatcttcaatgattgaatgaatgaaaccag 4095  T
Q  112 aactatggaaagtacctcttatcggctcgacgacgggccttgttttggaaaaatttgttgatggaaagaaacccagcccctctcggggtttg 203  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  4096 aactgtggaaagtacctcttatcggctcgacgatggtccttgttttggaaaaattagttgatggaaagaaacccagcccttctcggcgtttg 4187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 21761863 - 21762054
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||||| ||||| ||||    
T  21761863 acatctacaacaacccaattgcggctagaccctccttgtgtcacaaagcttcgtggcactccttcaggatcatctttggtgattgcatggatgaacccag 21761962  T
Q  112 aactatggaaagtacctcttatcggctcgacgacgggccttgttttggaaaaatttgttgatggaaagaaacccagcccctctcggggtttg 203  Q
    ||||||| |||||||| ||||||||||||||||||| | |||| ||||| ||||  | |||||| |||||||||| ||| |||||| |||||    
T  21761963 aactatgaaaagtaccccttatcggctcgacgacggtctttgtcttggacaaatcagctgatgggaagaaacccaacccttctcggcgtttg 21762054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 22948298 - 22948186
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| |||| | ||| | ||||||||| | ||| |||||||||||||| |||||||| || || || |    
T  22948298 acatctacagcaacccaattgtggctggatactcctggtgttataaaacctcgtggcacactttcaggatcatcttcaataattgcatggataaagcccg 22948199  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  22948198 aactgtggaaagt 22948186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 12382560 - 12382448
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||| ||||||||||||| ||||| || || || |    
T  12382560 acatctacagcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacgctttcaggaccatcttcaatgatcgcatggataaagcccg 12382461  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  12382460 aactgtggaaagt 12382448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 15594298 - 15594519
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||  |||||||||||||||||||| |    
T  15594298 acatcaacagcaacccaattgtggctagaccctccttgtgtcacaaaacttcgaggcacttcttccggatcatctttgatgattgcatgaatgaaaccgg 15594397  T
Q  112 aactatggaaagtacctcttatcggctcgacgacgggccttgttttggaaaaatttgttgatggaaagaaacccagcccctctcggggtttgnnnnnnng 211  Q
    | || |||||||||||  |||| |||||||||||||  ||||| |||||  |||  | ||||||||||||||||||||| |||||| |||||       |    
T  15594398 agctgtggaaagtaccctttattggctcgacgacggttcttgtcttggacgaatcagctgatggaaagaaacccagcccttctcggcgtttgttttctgg 15594497  T
Q  212 cagttgtatcaacttttcccag 233  Q
    ||||| |||||||||| |||||    
T  15594498 cagttctatcaactttccccag 15594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 22 - 233
Target Start/End: Complemental strand, 15917378 - 15917167
Alignment:
Q  22 caacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccagaactatggaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||||| | ||| |||||    
T  15917378 caacccaattgtggctagaccctccttgtgtcacaaagcttcgaggcacttcttccggatcatctttgatgattgcatgaatgaaaccggcactgtggaa 15917279  T
Q  122 agtacctcttatcggctcgacgacgggccttgttttggaaaaatttgttgatggaaagaaacccagcccctctcggggtttgnnnnnnngcagttgtatc 221  Q
    ||||||  |||| |||||||||||||  ||||  ||||| ||||  | ||| ||||||||||||||||| |||||| |||||       |||||| ||||    
T  15917278 agtaccctttattggctcgacgacggttcttgccttggacaaatcagctgaaggaaagaaacccagcccttctcggcgtttgttctctggcagttctatc 15917179  T
Q  222 aacttttcccag 233  Q
    |||||| |||||    
T  15917178 aactttccccag 15917167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 20441989 - 20441871
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  20441989 acatctacagcaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactctttcgggattatcttcaatgattgcatgaatgaacccag 20441890  T
Q  112 aactatggaaagtacctct 130  Q
    | || ||||||||||||||    
T  20441889 agctgtggaaagtacctct 20441871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 41439115 - 41438997
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  41439115 acatctacggcaacccaattgtggctagaccctccttgtgtcacaaagtttcgtggcactctttcgggattatcttcaatgattgcatgaatgaacccag 41439016  T
Q  112 aactatggaaagtacctct 130  Q
    | || ||||||||||||||    
T  41439015 agctgtggaaagtacctct 41438997  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 5952192 - 5952306
Alignment:
Q  10 ggacatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaacc 109  Q
    ||||||||||| |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || ||    
T  5952192 ggacatctacagcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcc 5952291  T
Q  110 agaactatggaaagt 124  Q
     ||||| ||||||||    
T  5952292 cgaactgtggaaagt 5952306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 46379198 - 46379096
Alignment:
Q  22 caacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccagaactatggaa 121  Q
    |||||||||||||||| ||  ||||| |||| | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || ||||| |||||    
T  46379198 caacccaattgtggctggatactcctggtgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccgaactgtggaa 46379099  T
Q  122 agt 124  Q
    |||    
T  46379098 agt 46379096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 799748 - 799875
Alignment:
Q  15 tctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccagaac 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||| |||||||    
T  799748 tctacagcaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactctttcgagattatcttcaatgattgcatgaatgaacccagaac 799847  T
Q  115 tatggaaagtacctcttatcggctcgac 142  Q
    | |||||||||||||| ||||| |||||    
T  799848 tgtggaaagtacctctgatcggttcgac 799875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 16288608 - 16288726
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  16288608 acatctacggcaacccaattgtggctagaccctccttgtgtcacaaagtttcgtggcactctttcgggattatcttcaatgattgcatgaatgaacccag 16288707  T
Q  112 aactatggaaagtacctct 130  Q
    | || ||||||||||||||    
T  16288708 agctgtggaaagtacctct 16288726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 16394680 - 16394792
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  16394680 acatctacagcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 16394779  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  16394780 aactgtggaaagt 16394792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 30371187 - 30371289
Alignment:
Q  22 caacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccagaactatggaa 121  Q
    |||||||||||||||| ||  ||||| |||| | ||| | ||||||||| | ||| ||||||||| ||||||||||||| || || || ||||| |||||    
T  30371187 caacccaattgtggctggatactcctggtgttataaaacctcgtggcacactttcaggatcatctccaatgattgcatggataaagcccgaactgtggaa 30371286  T
Q  122 agt 124  Q
    |||    
T  30371287 agt 30371289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 9468487 - 9468375
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||| ||||||||||||| ||||| || || || |    
T  9468487 acatctacagcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacgctttcaggaccatcttcaatgatcgcatggataaagcccg 9468388  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  9468387 aactgtggaaagt 9468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 36592 - 36770
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||  |||||||||||||||||||| |    
T  36592 acatcaacaacaacccaattgtggctagaccctccctgtgtcacaaaacttcgaggcacttcttccggatcatctttgatgattgcatgaatgaaaccgg 36691  T
Q  112 aactatggaaagtacctcttatcggctcgacgacgggccttgttttggaaaaatttgttgatggaaagaaacccagccc 190  Q
    |||| |||||||||||  |||| | |||||||||||  ||||| |||||  |||    |||||||||||||||||||||    
T  36692 aactgtggaaagtaccctttattgactcgacgacggttcttgtattggacgaatcaactgatggaaagaaacccagccc 36770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 34467536 - 34467418
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||    
T  34467536 acatctacagcaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactctttcgggattatcttcaatgattgcatgaatgaacccag 34467437  T
Q  112 aactatggaaagtacctct 130  Q
    | || ||||||||||||||    
T  34467436 agctgtggaaagtacctct 34467418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 17956007 - 17955895
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  17956007 acatctacagcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 17955908  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  17955907 aactgtggaaagt 17955895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 5441468 - 5441580
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| | || | ||  | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  5441468 acatctacagcaacccaattgtggctggatactcctggcgttataagacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 5441567  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  5441568 aactgtggaaagt 5441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 36377213 - 36377325
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  36377213 acatctacggcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 36377312  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  36377313 aactgtggaaagt 36377325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 37001867 - 37001979
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  37001867 acatctacggcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 37001966  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  37001967 aactgtggaaagt 37001979  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Complemental strand, 31519212 - 31519100
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||| | |||||||||||||||| ||   |||| | || | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  31519212 acatctatagcaacccaattgtggctggatattcctggcgttataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 31519113  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  31519112 aactgtggaaagt 31519100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 15785970 - 15786081
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||| ||||||||||||||||||| || || || |    
T  15785970 acatctacggcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggaccatcttcaatgattgcatggataaagcccg 15786069  T
Q  112 aactatggaaag 123  Q
    |||| |||||||    
T  15786070 aactgtggaaag 15786081  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 122
Target Start/End: Complemental strand, 28083 - 27973
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||| |||||||||||||||| ||  ||||| |  | | ||| | ||||||||| | ||| ||||||||||||||||||||||| || || || |    
T  28083 acatctacagcaacccaattgtggctggatactcctggcattataaaacctcgtggcacactttcaggatcatcttcaatgattgcatggataaagcccg 27984  T
Q  112 aactatggaaa 122  Q
    |||| ||||||    
T  27983 aactgtggaaa 27973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 9137654 - 9137766
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||| ||  ||||| | || | ||| ||||||||||| | |||  ||||||||| |||||||||||| || || || |    
T  9137654 acatctacggcaacccaattgtggctggatactcctggcgttataaaacttcgtggcacactttcaagatcatctttaatgattgcatggataaagcctg 9137753  T
Q  112 aactatggaaagt 124  Q
    |||| ||||||||    
T  9137754 aactgtggaaagt 9137766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 5630346 - 5630457
Alignment:
Q  12 acatctacaacaacccaattgtggctagaccctccttgtgtcacaaagcttcgtggcactccttccggatcatcttcaatgattgcatgaatgaaaccag 111  Q
    ||||||||  |||||||||||||||| ||  ||||| | || | ||| | ||||||||| | ||| ||| ||||||||||||||||||| || || || |    
T  5630346 acatctacggcaacccaattgtggctggatactcctggcgttataaaacctcgtggcacactttcaggaccatcttcaatgattgcatggataaagcccg 5630445  T
Q  112 aactatggaaag 123  Q
    |||| |||||||    
T  5630446 aactgtggaaag 5630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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