View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_476 (Length: 233)
Name: NF11737A_low_476
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_476 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 8947195 - 8946980
Alignment:
| Q |
9 |
cactcaccacgattccttggcctcaatacatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
108 |
Q |
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| T |
8947195 |
cactcaccacaattccttggcctcaatccatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
8947096 |
T |
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| Q |
109 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
208 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
8947095 |
ggcccgagagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgaaaatagcaacaattcatcatt |
8946996 |
T |
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| Q |
209 |
ttgcaacacgaaactc |
224 |
Q |
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|||||||| ||||||| |
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| T |
8946995 |
ttgcaacaagaaactc |
8946980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 8973300 - 8973515
Alignment:
| Q |
9 |
cactcaccacgattccttggcctcaatacatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
108 |
Q |
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|||||||||| |||||||||||| ||| ||| |||||||||||||||||||| | | ||| ||||||||||| ||||| ||||||| | ||||||| |
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| T |
8973300 |
cactcaccacaattccttggccttaattcatacaaaggggcatggccagcttctgattatggcaaagatgtcattgttggtatgattgataccggtgttt |
8973399 |
T |
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| Q |
109 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttgcaaataccaacaattcatcatt |
208 |
Q |
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| T |
8973400 |
ggccagaaagtgaaagtttcaaagataatgacatgcctcaaattccttcaaaatggaaagggcaattatgtcaatttgaaaataccaacaattcatcttt |
8973499 |
T |
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| Q |
209 |
ttgcaacacgaaactc |
224 |
Q |
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|||||||| ||||||| |
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| T |
8973500 |
ttgcaacaagaaactc |
8973515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 8961962 - 8962105
Alignment:
| Q |
73 |
aagatgtcattattggtttgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaa |
172 |
Q |
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||||||||||| ||||| ||||||| | ||||||||||| |||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
8961962 |
aagatgtcattgttggtgtgattgataccggtgtttggccagaaagtgaaagtttcaatgataatggatttactaaaattccttcaaaatggaaagggaa |
8962061 |
T |
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| Q |
173 |
gttatgtcaatttgcaaataccaacaattcatcattttgcaaca |
216 |
Q |
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| T |
8962062 |
attatgtcaatttgaaaataccaacaattcatctttttgcaaca |
8962105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 21688346 - 21688169
Alignment:
| Q |
9 |
cactcaccacgattccttggcctcaatacatttgaaggggcatggccagcttctaagtttggtcaagatgtcattattggtttgattgactcaggtgttt |
108 |
Q |
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|||||||| | ||| |||||||| ||| ||| | ||||||||||||| ||||| | |||||| ||||| ||||| ||||| | || ||| | ||||||| |
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| T |
21688346 |
cactcacctcaatttcttggccttaatccatatagaggggcatggccaacttctgattttggtaaagatatcattgttggtgtaatagacactggtgttt |
21688247 |
T |
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| Q |
109 |
ggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagggaagttatgtcaatttg |
186 |
Q |
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|||| |||||||||||||||| ||| |||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
21688246 |
ggccagaaagtgaaagttttagagatgatggaatgactaaaataccctcaaaatggaaaggccaattatgtcaatttg |
21688169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 34963857 - 34963779
Alignment:
| Q |
91 |
tgattgactcaggtgtttggcccgaaagtgaaagttttaatgataatggaatgactaaaatcccttcaaaatggaaagg |
169 |
Q |
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|||||||| |||| |||||||| |||||||| || || || ||| |||||||||||||||| ||||||||||||||||| |
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| T |
34963857 |
tgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaagg |
34963779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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